Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00261 ATGGATAATACTGGAGGTGATCTCAATAACTACTGGGATGGCGATATCTTTCTAAGAGCCGAAGAATTTGACAGCTTAGGATTGGACGAGACTTTATCGAGTTACTATGATTCTAGCTCACCGGATGGTTCTACGTCGAAAAACATAGTTACGGAGAGGAATAGAAGGAAGAAGCTAAACGAAAGACTGTTCGCACTCAGAGCTGTAGTTCCTAACATTACAAAGATGGATAAGGCGTCGATAATCAAAGACGCCATAGACTACATCCAAGAGCTTCAAGAGCAAGAAAGAATACTCCAAGCGGAAATAGAACAGTTAGAGAGCGGAACGGTGTTGAAAGACGTTGGAGGCTTCGACTTCGAGCGAGATCTACCGATTCTACTCCGATCAAAGAAAAGGAAGACGGAACAGCTCCGTGATACTGGAGGATATGGACCTTCTCCCATTGAAGTCCTCGATCTGAGTGTTACATTCATGGGAGAGAAAACAGTGGTGGTGAGCTTGACGTGCACGAAGAGAACGGAAACAATGGTGAAACTGTGTGAAGTGTTTGAAACGATGAAGCTGAAAGTCATCACTGGGAGCATCATTGCGGTGTCTGGAAGACTTACCAAGACCCTTTTCATCGAGGCAGAGGAAGAAGAGAAAGATGTTATAAAGCTACAAATAGAGAAGGCCATTGCATTTTTCAATGGCCCACAGAGTCCAATGAGCATTTGA 720 44.03 MDNTGGDLNNYWDGDIFLRAEEFDSLGLDETLSSYYDSSSPDGSTSKNIVTERNRRKKLNERLFALRAVVPNITKMDKASIIKDAIDYIQELQEQERILQAEIEQLESGTVLKDVGGFDFERDLPILLRSKKRKTEQLRDTGGYGPSPIEVLDLSVTFMGEKTVVVSLTCTKRTETMVKLCEVFETMKLKVITGSIIAVSGRLTKTLFIEAEEEEKDVIKLQIEKAIAFFNGPQSPMSI 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40695923 40698262 + Bda014913.1 Bda02g00261 2556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00261 239 SMART finulus 49 98 IPR011598 GO:0046983
Bda02g00261 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 108 IPR036638 GO:0046983
Bda02g00261 239 Coils Coil 82 109 - -
Bda02g00261 239 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 8 232 - -
Bda02g00261 239 Gene3D - 38 109 IPR036638 GO:0046983
Bda02g00261 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Bda02g00261 239 PANTHER TRANSCRIPTION FACTOR BHLH35 8 232 - -
Bda02g00261 239 Pfam Helix-loop-helix DNA-binding domain 49 93 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g01894 Bda02g00261 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00261 Bda-Chr2:40695923 Bda07g01367 Bda-Chr7:16512958 5.55E-18 dispersed
Bda02g00260 Bda-Chr2:40638117 Bda02g00261 Bda-Chr2:40695923 1.73E-127 tandem
Bda02g00261 Bda-Chr2:40695923 Bda02g00262 Bda-Chr2:40879425 1.36E-125 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15536 PF00010 HLH 2.10E-12 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00261 - - vvi:100244514 296.204