Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00262 ATGGATAATATTGGAGGTGATCTAAATAACTACTGGGATGGCGATACCTTTCTAAGAGCCGAAGAGTTTGACAGCTGGGGATTGGACGAGACTTTATCGAGTTATTATGATTCTAGCTCACCGGATGGTTCTGCGTCGAAAAATATAGTTTCCGAGAGGAATAGGAGGAAGAAGCTAAATGAAAGACTGTTCGCACTCAGAGCTGTAGTTCCTAACATTACAAAGATGGACAAGGCGTCGATAATCAAAGACGCCATAGACTACATCCAAGAGCTTCAAGAGCAAGAAAGAATACTCCAAGGGGAAATAGAAGAGTTAGAGAGCGGAACGGTGTTGAAAGACGATGGAGGTTTCGACTTCGAGAGAAATCTACCGATTCTACTCCGATCAAAGAAATTAAAGACGGAACAGCTCTATGATTCAGGAGGATCTGGAACTTCTCCCATTGAAGTCCTCGATCTGAGTGTTACATTCATAGGAGAGAAAACAATGATGGTGAGCTTGACGTGCACGAAGAGAACCGAAACAACGGTGAAACTGTGCGAGGTGTTTGAGACGATGAATCTGAAAGTCATCGCTGAGACCATCATTGCGGTGTCTGGTAGACTTACCAAGACCCTTTTCATCGAGGTTAGTCGGTCATTATTTGTTAATTATTATTTTAATGTTCTCTTAATCACCTCTAATCTCTCTTTAATTGCAATTGCAAGGTTGTGA 717 41.98 MDNIGGDLNNYWDGDTFLRAEEFDSWGLDETLSSYYDSSSPDGSASKNIVSERNRRKKLNERLFALRAVVPNITKMDKASIIKDAIDYIQELQEQERILQGEIEELESGTVLKDDGGFDFERNLPILLRSKKLKTEQLYDSGGSGTSPIEVLDLSVTFIGEKTMMVSLTCTKRTETTVKLCEVFETMNLKVIAETIIAVSGRLTKTLFIEVSRSLFVNYYFNVLLITSNLSLIAIARL 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40879425 40880442 + Bda014917.1 Bda02g00262 2557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00262 238 PANTHER TRANSCRIPTION FACTOR BHLH35 6 212 - -
Bda02g00262 238 Coils Coil 89 109 - -
Bda02g00262 238 Gene3D - 38 109 IPR036638 GO:0046983
Bda02g00262 238 Pfam Helix-loop-helix DNA-binding domain 50 93 IPR011598 GO:0046983
Bda02g00262 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 43 108 IPR036638 GO:0046983
Bda02g00262 238 SMART finulus 49 98 IPR011598 GO:0046983
Bda02g00262 238 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 6 212 - -
Bda02g00262 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01894 Bda-Chr1:55110866 Bda02g00262 Bda-Chr2:40879425 3.01E-57 dispersed
Bda02g00260 Bda-Chr2:40638117 Bda02g00262 Bda-Chr2:40879425 5.27E-132 dispersed
Bda02g00262 Bda-Chr2:40879425 Bda07g01367 Bda-Chr7:16512958 1.19E-18 dispersed
Bda02g00261 Bda-Chr2:40695923 Bda02g00262 Bda-Chr2:40879425 1.36E-125 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15537 PF00010 HLH 2.60E-12 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00262 - - jre:109003087 265.003