Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00275 GAAAAAATTCCCATCGACGAAGTGTTTGAGCAGTTGAAATGCACCCGAGAAGGACTAACATCGGTGGAGGGCGAAAACCGGTTGCAGATTTTCGGACCCAACAAATTAGAAGAGAAAAAGGAGAGCAAGTTTCTGAAGTTTTTAGGGTTTATGTGGAATCCCCTATCGTGGGTGATGGAAGCTGCTGCAATTATGGCGATTGCCCTAGCAAATGGCGGTGGAAAGCCTCCGGATTGGCAGGACTTTGTTGGTATTATTTGTTTGTTGGTGATTAATTCCACCATTAGTTTTGTTGAAGAAAATAATGCTGGAAATGCTGCTGCTGCTCTTATGGCTGGTCTCGCTCCAAAAACCAAGATTTTCTCCGGTTCGACATGTAAACAAGGAGAAATTGAAGCTGTTGTTATTGCCACTGGTGTTCATACCTTCTTCGGAAAAGCAGCTCATCTTGTTGACAGTACGAACAATGTTGGGCATTTCCAGAAGGTTCTCACATCCATCGGAAATTTCTGTATATGTTCCATTGCAGTTGGAATGCTGATAGAAATCATTGTCATGTACCCGATTCAAAAACGAAAGTACAGAGATGGAATTGACAACCTTCTTGTTCTCTTGATCGGAGGAATCCCAATTGCCATGCCAACAGTTTTGTCTGTGACAATGGCTATTGGATCCCACAAGCTGTCCCAACAAGGTGCCATTACAAAGCGAATGACTGCTATTGAAGAACTGGCAGGAATGGACGTCCTCTGCAGTGACAAAACAGGCACACTAACTCTCAACAAGCTTAGTGTTGACAAAAACTTAGTCGAGGTATTTGCTAAGGGGGTAGATAAAGACCACGTTATCTTACTTGCTGCAAGGGCCTCTAGAACTGAAAACCAAGACGCAATAGATGCTGCCATGGTCGGAATGTTGGCTGACCCAAAGGAGGCACGAGCTGGTATAAGGGAGGTTCACTTCTTACCATTCAATCCCGTGGACAAGAGAACTGCATTGACTTATATTGATTCGGATGGAAGCTGGCACAGAGCTAGCAAAGGCGCTCCAGAGCAAATATTGACCCTTTGCAACTGCAAAGAGGATGTGAAAAGGAAGGTTCATGGAGTAATTGATAAATATGCCGAACGTGGGCTTCGCTCTTTGGCTGTTGGAAGACAGGAAGTACCTGAAAGAAGCAAAGAAAGCGCTGGTGGACCATGGCAGTTTGTTGGTTTATTGTCGCTTTTTGATCCTCCAAGACATGATAGTGCTGAAACAATTCGTAGAGCTCTCAATTTGGGTGTGAATGTTAAGATGATCACTGGCGATCAACTTGCTATTGCCAAGGAGACTGGCCGGAGACTCGGAATGGGGAGTAACATGTACCCATCAGCTTCCTTACTTGGACAGCATAAGGATGAAAGTATTGCCGGCCTTCCCATAGAGGAGTTAATTGAAAAGGCAGATGGATTTGCTGGAGTTTTCCCAGAGCACAAGTATGAAATAGTGAAGAAATTGCAAGAGAGGAAGCACATTTGTGGAATGACGGGAGATGGTGTAAATGATGCTCCTGCGTTGAAGAAGGCTGATATTGGAATTGCTGTGGCAGATGCTACTGATGCTGCAAGAGGTGCTTCTGACATTGTTCTCACAGAACCTGGCCTCAGTGTTATCATTAGTGCTGTGCTTACTAGCAGAGCTATTTTTCAGAGAATGAAGAACTACACTGTTAGTTCAACTTATTTTCTTATTTTTGGTTTCATGCTTATTGCCTTGATATGGAAGTTTGACTTTTCGCCGTTCATGGTTTTGATCATTGCAATTTTGAATGATGGTACAATTATGACTATTTCAAAAGATAGAGTGAAGCCATCTCCAATGCCCGATAGTTGGAAATTAAAAGAGATTTTCGCTACGGGGATCATGCTCGGAGGTTACTTGGCAATAATGACTGTATTATTCTTCTGGTTAATGAAGGACACAGATTTTTTCTCCGAGAAATTTGGTGTAAAATCTATTAGGCATAATGATAAAGAAATGATGGCTGCTCTTTACTTACAAGTGAGTATTGTCAGCCAAGCTCTGATATTTGTGACCAGATCACGGAGCTGGTCGTATGTTGAACGTCCTGGCTTGCTGCTTGTTAGTGCTTTTATGATTGCACAGCTGGTTGCCACTGTTATAGCAGTTTATGCAAATTGGGGTTTTGCAAGGATAAAGGGTGTCGGATGGGGATGGGCCGGTGTCATTTGGATATACAGTATCGTGTTTTATGTCCCACTCGACGTAATGAAGTTTGTGATCCGCTATATCTTAAGTGGAAAGGCTTGGCTTAACTTGCTAGAAAATAAGACTGCCTTCACAACGAAGAAGGATTATGGAAAAGAAGAAAGAGAAGCACAATGGGCTCTGGCTCAAAGAACTCTTCATGGACTCCAGCCACCAGAATCAAGTAATATTTTCCCTGAAAAGAGCAATTACAGAGAGCTATCGGAGATAGCCGAGCAGGCCAAGAGACGAGCCGAAGTTGCGAGGCTCCGAGAACTTCATACGCTGAAGGGCCATGTCGAATCGGTGGTGAAGCTAAAAGGGCTCGATATCGATACGATTCAACAACATTATACAGTG 2610 43.41 EKIPIDEVFEQLKCTREGLTSVEGENRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIICLLVINSTISFVEENNAGNAAAALMAGLAPKTKIFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTSIGNFCICSIAVGMLIEIIVMYPIQKRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEELAGMDVLCSDKTGTLTLNKLSVDKNLVEVFAKGVDKDHVILLAARASRTENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGSWHRASKGAPEQILTLCNCKEDVKRKVHGVIDKYAERGLRSLAVGRQEVPERSKESAGGPWQFVGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGSNMYPSASLLGQHKDESIAGLPIEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTVSSTYFLIFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLKEIFATGIMLGGYLAIMTVLFFWLMKDTDFFSEKFGVKSIRHNDKEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLVSAFMIAQLVATVIAVYANWGFARIKGVGWGWAGVIWIYSIVFYVPLDVMKFVIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPESSNIFPEKSNYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 41226892 41231498 - Bda033405 Bda02g00275 2570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00275 870 PANTHER PLASMA MEMBRANE ATPASE 1 120 - -
Bda02g00275 870 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 766 IPR023298 -
Bda02g00275 870 Pfam haloacid dehalogenase-like hydrolase 247 524 - -
Bda02g00275 870 ProSitePatterns E1-E2 ATPases phosphorylation site. 253 259 IPR018303 -
Bda02g00275 870 SFLD C1.7: P-type atpase like 233 561 - -
Bda02g00275 870 PANTHER CALCIUM-TRANSPORTING ATPASE 1 120 - -
Bda02g00275 870 PANTHER CALCIUM-TRANSPORTING ATPASE 120 850 - -
Bda02g00275 870 SUPERFAMILY HAD-like 247 557 IPR036412 -
Bda02g00275 870 SFLD p-type atpase 233 561 IPR044492 -
Bda02g00275 870 PANTHER PLASMA MEMBRANE ATPASE 120 850 - -
Bda02g00275 870 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 119 725 IPR006534 GO:0008553|GO:0016021|GO:0120029
Bda02g00275 870 Gene3D - 139 734 - -
Bda02g00275 870 Gene3D - 819 870 - -
Bda02g00275 870 PRINTS H+-transporting ATPase (proton pump) signature 679 700 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda02g00275 870 PRINTS H+-transporting ATPase (proton pump) signature 482 498 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda02g00275 870 PRINTS H+-transporting ATPase (proton pump) signature 510 526 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda02g00275 870 PRINTS H+-transporting ATPase (proton pump) signature 541 566 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda02g00275 870 PRINTS H+-transporting ATPase (proton pump) signature 367 385 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda02g00275 870 Gene3D - 263 410 IPR023299 GO:0000166
Bda02g00275 870 Pfam E1-E2 ATPase 115 230 - -
Bda02g00275 870 Gene3D - 248 547 IPR023214 -
Bda02g00275 870 Coils Coil 821 841 - -
Bda02g00275 870 Gene3D - 119 138 - -
Bda02g00275 870 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 485 587 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda02g00275 870 CDD P-type_ATPase_H 18 760 IPR006534 GO:0008553|GO:0016021|GO:0120029
Bda02g00275 870 Gene3D - 17 118 - -
Bda02g00275 870 SMART Cation_ATPase_N_a_2 1 71 IPR004014 -
Bda02g00275 870 Pfam Cation transporter/ATPase, N-terminus 2 65 IPR004014 -
Bda02g00275 870 PRINTS P-type cation-transporting ATPase superfamily signature 510 529 - -
Bda02g00275 870 PRINTS P-type cation-transporting ATPase superfamily signature 251 265 - -
Bda02g00275 870 PRINTS P-type cation-transporting ATPase superfamily signature 427 437 - -
Bda02g00275 870 PRINTS P-type cation-transporting ATPase superfamily signature 405 416 - -
Bda02g00275 870 PRINTS P-type cation-transporting ATPase superfamily signature 533 545 - -
Bda02g00275 870 Gene3D - 49 103 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00275 Bda09g00970 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00275 Bda-Chr2:41226892 Bda11g00095 Bda-Chr11:1127918 1.91E-50 dispersed
Bda14g00837 Bda-Chr14:6442082 Bda02g00275 Bda-Chr2:41226892 0 dispersed
Bda01g00961 Bda-Chr1:43192651 Bda02g00275 Bda-Chr2:41226892 0 transposed
Bda03g00836 Bda-Chr3:7157978 Bda02g00275 Bda-Chr2:41226892 9.47E-39 transposed
Bda02g00275 Bda-Chr2:41226892 Bda03g00039 Bda-Chr3:511302 1.43E-21 wgd
Bda02g00275 Bda-Chr2:41226892 Bda09g00970 Bda-Chr9:38857369 5.38E-50 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00275 K01535 - gmx:100806580 1384.78