Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00295 ATGGAACTGAAGAAGGAGAAGCTCGTTAGGTTTTATTCAGATCGAAGTAAAAAACAGAGAGAAGCATCGTCGAGAGAAATCGAACTTCTGCATCCAGAACAATCATTGTCGAACAAGGTTTCATCATCTTCAATCCGGAAGAATGATTACGGGCCTGTGGGACACAAAAATCGATTCACCGAAACTAATCAAACTGGCAAATTTAAGGTCTTTCCGGGAGATCAAGAGCCATTACGCAAGAGAATATTCGATCCGGGAAGCGAAATTGTGGTGCAATGGAACCAGGTTTTCATCGTCGCCTGCTTGGTGGCGCTTTTTGTCGATCCGTTTTATTTTTACTTGCCTACTTTGGGAGGAAATACGAGTTCATCGTGTGTGCACACTGACATGAATCTACGAATAGTGGTGACGTTATTTCGGACTTTCGCCGACATTTTCTATCTCCTCCATATGGTCATCAAGTTTCGGACTGCATATGTCTCTCCGACCTCCCGTATTTTTGGAAGAGGTGAACTTGTCATGGACCCGAAGAAGATCGCATGGAGGTATATTCGATCCGACTTTTTCATCGATCTCATTGCCACTCTGCCTCTTCCTCAGATGGTCATCTGGTTTATCATACCAGCGACGAGAAGCCCTCAAACGGATCATAATAACAATGCTCTTGCCCTCATCGTGCTCTTTCAATACGTTCCGAGATTATATTTGATTTTTCCGTTAAGTTCAGAGATAATTAAAGCAACAGGAGTTGTGACGAAAACAGCATGGGCCGGAGCAGCTTATAACCTGCTGCTCTACATGTTGGCTAGCCATGTATTAGGGGCGGCCTGGTATTTGCTATCTATTGACCGGTACACTTCTTGCTGGAAATCGATGTGCAGAAAGAAAGAGTTTAACCCTATAAAATGTCTGCCTACTTACTTGGATTGTGATGTTTTCAATCACGATGACCGAAAAATTTGGGCGAATTCCACGACCGTGTTTAAGAACTGCGATCCTGATGGGGGAACTTTCAATTATGGCATTTTTGAAGATGCATTGTCGAAAGAGGTTGTGTCGACGAACTTTATGAGGAAATATTTCTATTGCTTATGGTGGGGTTTACAAAACCTGAGTTCGTACGGGCAAAATTTGGGTACAAGCACTTTCATCGGAGAGACCTTATTCGCCATTCTCATCGCCATCTTGGGTCTTGTTTTATTTGCTCATCTAATTGGGAATATGCAGACTTATTTGCAATCCATCACCATTAGGCTCGAGGAATGGCGACTCAAGCGAAGAGACACCGAGGAGTGGATGAGACACCGGCAACTTCCCGGGGATCTGAAACAACGAGTGCGGCGTTTTGTACAATATAAATGGCTCGCCACTCGAGGGGTCGATGAAGAAGCCATATTGCATAGCTTACCAGCTGATCTTCGTCGCGATATTCAGAGACACCTTTGCTTAGACCTCGTTCGACGAGTCCCTTTCTTCTCACAAATGGACGATCAGCTGCTAGATGCAATATGCGAGCGGCTAGTATCCTCGCTAAGCACTCAAGGCACTTACATCGTCCGAGAGGGTGATCCTGTGACTGAAATGCTTTTTATAATCCGGGGAAGGCTGGATAGCTCGACGACCAACTGGAGGTCGGACCGGTTTCTTCAACTTCCATAA 1659 44.91 MELKKEKLVRFYSDRSKKQREASSREIELLHPEQSLSNKVSSSSIRKNDYGPVGHKNRFTETNQTGKFKVFPGDQEPLRKRIFDPGSEIVVQWNQVFIVACLVALFVDPFYFYLPTLGGNTSSSCVHTDMNLRIVVTLFRTFADIFYLLHMVIKFRTAYVSPTSRIFGRGELVMDPKKIAWRYIRSDFFIDLIATLPLPQMVIWFIIPATRSPQTDHNNNALALIVLFQYVPRLYLIFPLSSEIIKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSIDRYTSCWKSMCRKKEFNPIKCLPTYLDCDVFNHDDRKIWANSTTVFKNCDPDGGTFNYGIFEDALSKEVVSTNFMRKYFYCLWWGLQNLSSYGQNLGTSTFIGETLFAILIAILGLVLFAHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPGDLKQRVRRFVQYKWLATRGVDEEAILHSLPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLDSSTTNWRSDRFLQLP 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42112849 42116216 + Bda014969.1 Bda02g00295 2590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00295 552 Pfam Ion transport protein 93 417 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bda02g00295 552 Gene3D - 95 416 - -
Bda02g00295 552 PRINTS EAG/ELK/ERG potassium channel family signature 151 160 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda02g00295 552 PRINTS EAG/ELK/ERG potassium channel family signature 386 397 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda02g00295 552 PRINTS EAG/ELK/ERG potassium channel family signature 454 461 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda02g00295 552 PRINTS EAG/ELK/ERG potassium channel family signature 404 413 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda02g00295 552 PRINTS EAG/ELK/ERG potassium channel family signature 268 278 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda02g00295 552 SUPERFAMILY cAMP-binding domain-like 421 540 IPR018490 -
Bda02g00295 552 SUPERFAMILY Voltage-gated potassium channels 87 413 - -
Bda02g00295 552 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 45 542 - -
Bda02g00295 552 Gene3D Jelly Rolls 489 551 IPR014710 -
Bda02g00295 552 ProSiteProfiles cAMP/cGMP binding motif profile. 491 537 IPR000595 -
Bda02g00295 552 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 45 542 - -
Bda02g00295 552 Gene3D Helix hairpin bin 419 482 - -
Bda02g00295 552 CDD CAP_ED 491 542 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00295 Bda-Chr2:42112849 Bda12g00522 Bda-Chr12:7998729 0 dispersed
Bda11g00884 Bda-Chr11:8683641 Bda02g00295 Bda-Chr2:42112849 0 transposed
Bda02g00295 Bda-Chr2:42112849 Bda03g00048 Bda-Chr3:613252 5.52E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00295 K05391 - vvi:100250129 866.685