Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00311 ATGCAGCAGGGAGAGCAGACAGTTCTGAGCTTGAGACCTGGCGGTGGTCGAGGCAGACTCCTTGGTCCTCGTTTTGATTCCTCATCTTCTTCGTCGTCTTCTTCCTTCGCCTTTGGTTCCTTTTCCTCTGATCTTTCTTTACCTCGTCCTCATGGCGCTCTCCCTCCTAATCTTAAGGTTGAAGATTACCGCTTTGATGGTCACGAACAAGTGCGCTATACCAGGGATCAGCTGTTACAGCTGAGGGAGGTTTTTCAAGTTCCAGATGTCATTTTAAAACTCAAGCAAGAGATAGAAGCTGAATTTTTTGGTGATGATCAAACTTGGAACCGCGGAGATATCAATTCACTAAATCAGCCGCAGCATCGGTATTCTGAACCAGATAATCGAGACTGGCGTAGCAGGTCTGCAAATATAACTTCCCCAGGAGAGGATAGGTCCAGGGATACATTTCATGATAGAGATTTTGGTGGCCGATTTGACTCAATAGACCAAGAGGCAAATCGCCACGACCAACGTAACAATCAGTCTTCGAAGGCCAACGCCTCTTTGGATCAAGGGGTGGGAGCTGCTACTGCTCTAGTCAAGGCAGAAGTACCATGGTCAGCGAGGAAGGGGAACATATCTGAAAAGGAACGTGTCCTGAAGACTGTAAAAGGGATCTTGAATAAGCTGACACCCGAAAAGTTTGATGTCCTCAAAGGTCAGCTGATTGATTCCGGCATTACTTCAGCTGATATTTTGAAGGATGTTATTTCATTGATATTTGACAAAGCTGTGCTTGAGCCAACATTTTGCCCAATGTATGCACTTTTGTGCTCTGATCTTAATAAAAAGCTCCCACCATTTCCATCTGACGAACCAGGTGGAAAAGAAATTACTTTTAAGCGAGTCCTCTTAAATATCTGCCAGGAGGCTTTTGAAGGTTCTGATAAATTGCGGGAAGAAGCTAGACTAATGATTGCCCCTGAACAGGAAATGGAACGAAAGGATAAAGAAAGACTGATTAAGCTTCGAACACTTGGAAATATTAGGTTAATTGGGGAGCTACTAAAGCAGAAGATGGTGCCTGAGAAGATTGTTCATCACATTGTTCAAGAACTTTTAGGAAATGATAATAATACCTGTCCAGCTGAAGAAAATGTCGAGGCAATCTGTCAGTTTTTTAACACTATAGGTAAGCAACTGGATGAAAGCCCAAAATCACGTCGCATAAGTGATTCGTACTTTAGTCGATTGCGAGAATTGACCACAAACTCCCAGATGGCCCCACGATTGCGATTCATGGTTCGTGATGTACTTGATTTGCGAGCTAACAAGTGGGTTCCCCGTCGAGAAGAGGTAAAAGCTAAAACCATCAATGAAATACATTCAGAAGCTGAAAAAACTCTCGGATTGCGTCCTGGTGCAACTGCAAGCATTAGACATAATCGTGGAATTGTGTCTAATCTGCCAGGAGTTGCAAGCCCAACTGGATATCCTATAAATGGACCTGGTTTGGGCGGTATGATGCCTGGAATGCCTGGAACCAGGAAGATGCCTGGGATGCCTGGACTCGATAATGACAGCTGGGAGGTTCAGAGGTCTAGATCAACGCCTAAGGCTCAAGGATCCCCCATGCAACTTGCTGGCCGGGGCACAAATCCATTGACGGCCAAATCATCGGCATTAAACACAAGGCTTTTACCTCAAGGTAGTGGTGGGCTCCTCAGTGGGAAAACTAGTGCCCTTCTGCAAGGTAGTAGCCCATCTCCTACCTCCCCCACCAATATTGGCTATGTTTCTGAGCCTTCTCAAGCATTTCGAACTGGTCCTCCATTATTTACACCTCAAATTTCTGAGCGGCCACAGGCCCCACCTGCAAGTTTTAATCTTGATAATCTGAGGAAGAAGACTATGTCACTTCTAGAAGAATATTTCAGCATTAGGATTATTGATGAAGCTGTACTGTGTGTGGAGGAGCTTAAGGCTCCAAATTATCATCCTGAGGTTGTAAAGGAAGCCATTTCCACGGCTCTGGAGAAAAGTCCGCCCTGTGTCGAAGATGTCTCAAAGCTTATTGAGTGTTTATATGCAAGGAAGATTCTTACCATCAGAGACGTAGGGACTGGTTGCTTGCTTTATGCCTCTATGATTGATGATATAGCCATCGATTTGCCAAAATCTCCTAATAATTTTGGTGAAATTATAGGGAGACTAGTTTTGTCTGGAAGCTTGAATTTCAAGGTGGTTAAGGAGGTCCTTGAGAAGGTTGAAGACGGCTTCTTCCGAAAAGTTATTCTCGATGCGGCAGTGAGGACAGTCAATAATAGTTCCTCCGGAAAAGATGTGATGGATTCCCAGGGCTCTGATATCGAGTCCTGTCGGAAGCTTCTCGATTAA 2382 44.67 MQQGEQTVLSLRPGGGRGRLLGPRFDSSSSSSSSSFAFGSFSSDLSLPRPHGALPPNLKVEDYRFDGHEQVRYTRDQLLQLREVFQVPDVILKLKQEIEAEFFGDDQTWNRGDINSLNQPQHRYSEPDNRDWRSRSANITSPGEDRSRDTFHDRDFGGRFDSIDQEANRHDQRNNQSSKANASLDQGVGAATALVKAEVPWSARKGNISEKERVLKTVKGILNKLTPEKFDVLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYALLCSDLNKKLPPFPSDEPGGKEITFKRVLLNICQEAFEGSDKLREEARLMIAPEQEMERKDKERLIKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGNDNNTCPAEENVEAICQFFNTIGKQLDESPKSRRISDSYFSRLRELTTNSQMAPRLRFMVRDVLDLRANKWVPRREEVKAKTINEIHSEAEKTLGLRPGATASIRHNRGIVSNLPGVASPTGYPINGPGLGGMMPGMPGTRKMPGMPGLDNDSWEVQRSRSTPKAQGSPMQLAGRGTNPLTAKSSALNTRLLPQGSGGLLSGKTSALLQGSSPSPTSPTNIGYVSEPSQAFRTGPPLFTPQISERPQAPPASFNLDNLRKKTMSLLEEYFSIRIIDEAVLCVEELKAPNYHPEVVKEAISTALEKSPPCVEDVSKLIECLYARKILTIRDVGTGCLLYASMIDDIAIDLPKSPNNFGEIIGRLVLSGSLNFKVVKEVLEKVEDGFFRKVILDAAVRTVNNSSSGKDVMDSQGSDIESCRKLLD 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42762270 42779164 + Bda014993.1 Bda02g00311 2606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00311 793 SMART if4_15 215 440 IPR003890 GO:0003723|GO:0005515
Bda02g00311 793 MobiDBLite consensus disorder prediction 1 35 - -
Bda02g00311 793 MobiDBLite consensus disorder prediction 109 123 - -
Bda02g00311 793 ProSiteProfiles MI domain profile. 627 749 IPR003891 -
Bda02g00311 793 Gene3D - 622 789 - -
Bda02g00311 793 MobiDBLite consensus disorder prediction 504 620 - -
Bda02g00311 793 Pfam MIF4G domain 215 440 IPR003890 GO:0003723|GO:0005515
Bda02g00311 793 Pfam MA3 domain 628 739 IPR003891 -
Bda02g00311 793 MobiDBLite consensus disorder prediction 524 606 - -
Bda02g00311 793 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 792 - -
Bda02g00311 793 Gene3D - 206 441 - -
Bda02g00311 793 SUPERFAMILY ARM repeat 623 780 IPR016024 -
Bda02g00311 793 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 792 IPR045208 GO:0003743
Bda02g00311 793 MobiDBLite consensus disorder prediction 109 184 - -
Bda02g00311 793 MobiDBLite consensus disorder prediction 145 173 - -
Bda02g00311 793 SMART ma3_7 628 740 IPR003891 -
Bda02g00311 793 SUPERFAMILY ARM repeat 207 443 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00311 Bda-Chr2:42762270 Bda03g00106 Bda-Chr3:956482 0 dispersed
Bda02g00311 Bda-Chr2:42762270 Bda02g00318 Bda-Chr2:43037399 0 proximal
Bda03g01150 Bda-Chr3:12439423 Bda02g00311 Bda-Chr2:42762270 1.28E-07 transposed
Bda02g00311 Bda-Chr2:42762270 Bda09g00900 Bda-Chr9:25213730 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00311 K03260 - tcc:18589002 1043.11