Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00343 ATGGCAACAGCTCAGCTGACTGCATCTACCATCTCAGCCAGGAGTCTGCCTTCGTTTGAGGGTCTTCGTTCTTCCGCTAACAAGTTTTCTCCCTCCTTTGAAAATGTGAGGATGGTTGGACTCGCCAATCGTTCTTTCCGAAGTCTGGTGGTTAAAGCTGCCACTGTCGTTACTCCCAAGTACACTTCGGTTAAGCCTTTGGGTGATAGAGTACTAGTTAGGACAAAAAATGCAGAAGAAAAGACTCAGGGAGGTATTTTACTTCCAACTGCAGCTCAGACTAAGCCTCAAGGGGGTGAAGTGGTTGCTGTTGGTGAAGGCAAAACCATTGGAAAGACCAAAGTGGATATTTGTGTTAAGACTGGTGCACAAGTTGTTTATTCCAAATATGCGGGGACAGAGTTGGAGTTCAATGGCTCAAAGCATCTTATCTTGAAGGAGGACGACATTGTTGGCATACTAGAAACAGATGATGTGAAGGATCTAAAGCCCTTGAATGACAGAGTTCTGATCAAGGTTGCCGAAGCTGAGGAGAAAACGGCTGGAGGATTGTTGCTGACAGAAGCAACCAAGGAGAAGCCTTCCATTGGCACGGTGGTGGCTGTTGGGCCTGGATCACTGGATGAGGAAGGCAACAGGAAGTCATTATCTGTAGCCTCCGGTAGCACCGTGATGTACTCCAAGTACGCAGGCAATGACTTCAAGGGCAAGGACGGTTCGGAATATATAGTTTTACGGGTTTCAGATGTCATGGCAGTGCTTTCTTAG 768 47.14 MATAQLTASTISARSLPSFEGLRSSANKFSPSFENVRMVGLANRSFRSLVVKAATVVTPKYTSVKPLGDRVLVRTKNAEEKTQGGILLPTAAQTKPQGGEVVAVGEGKTIGKTKVDICVKTGAQVVYSKYAGTELEFNGSKHLILKEDDIVGILETDDVKDLKPLNDRVLIKVAEAEEKTAGGLLLTEATKEKPSIGTVVAVGPGSLDEEGNRKSLSVASGSTVMYSKYAGNDFKGKDGSEYIVLRVSDVMAVLS 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 43775156 43776630 + Bda015050.1 Bda02g00343 2638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00343 255 SUPERFAMILY GroES-like 161 254 IPR011032 -
Bda02g00343 255 PRINTS 10kDa chaperonin signature 241 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bda02g00343 255 PRINTS 10kDa chaperonin signature 162 177 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bda02g00343 255 PRINTS 10kDa chaperonin signature 219 231 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bda02g00343 255 PRINTS 10kDa chaperonin signature 184 205 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bda02g00343 255 PANTHER GROES CHAPERONIN 1 255 - -
Bda02g00343 255 SMART Cpn10_2 63 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bda02g00343 255 SMART Cpn10_2 161 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bda02g00343 255 CDD cpn10 162 254 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bda02g00343 255 Hamap Co-chaperonin GroES [groES]. 63 155 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bda02g00343 255 ProSitePatterns Chaperonins cpn10 signature. 162 186 IPR018369 GO:0005524|GO:0006457
Bda02g00343 255 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bda02g00343 255 Pfam Chaperonin 10 Kd subunit 162 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bda02g00343 255 Pfam Chaperonin 10 Kd subunit 64 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bda02g00343 255 PIRSF Cpn21 1 255 IPR017416 GO:0006457|GO:0046914|GO:1901671
Bda02g00343 255 Gene3D GroES chaperonin 157 255 IPR037124 GO:0006457
Bda02g00343 255 Gene3D GroES chaperonin 57 156 IPR037124 GO:0006457
Bda02g00343 255 ProSitePatterns Chaperonins cpn10 signature. 64 88 IPR018369 GO:0005524|GO:0006457
Bda02g00343 255 Hamap Co-chaperonin GroES [groES]. 161 255 IPR020818 GO:0005524|GO:0006457|GO:0140662
Bda02g00343 255 SUPERFAMILY GroES-like 62 155 IPR011032 -
Bda02g00343 255 CDD cpn10 63 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00343 Bda-Chr2:43775156 Bda09g01057 Bda-Chr9:40799955 1.65E-156 dispersed
Bda02g00339 Bda-Chr2:43690517 Bda02g00343 Bda-Chr2:43775156 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00343 K04078 - mnt:21387593 406.757