Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00379 ATGGACGGAGGGGCTTCATTCAAACCTCGCACGGTGGAGGAAGTTTTTAGGGACTTTAAGGGTCGTCGAGCTGGCATGATTAAAGCTCTTACCACTGATGTTGTAGAATTTTATCAGCAGTGTGACCCTGAGAAGGAGAATCTTTGCCTGTATGGATTGCCTAACGAAGAGTGGGACGTCAATTTACCTGCTGAAGAAGTGCCTCCAGAACTCCCAGAGCCTGCTCTGGGTATCAATTTTGCAAGAGATGGAATGCAAGAAAAGGATTGGCTGTTACTGGTTGCAGTTCATGGCGATGCTTGGTTGCTCTCCGTAGCTTTCTATTTTGGTGCCAGATTTGGTTTCAACAAAGCTGACAGGAAACGTCTTTTCACGTCGATAAATGATCTACCGACTATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAAGGGAAAGAGAAGCCATCAGTTTCAAATCATGGCAACAACAAAACCAAATCAGGCTCAAAAGGGCAAGGATCTGAAGCGGGAAAATATTCGAAGGAGATGATGCCAAAGGAGGAGGACGAGGGAATGGGATTGGAGGATGAAGATGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGAGGAGGAGCATTCCTTATGTTGGGCCTGTAATGGGAGCTATACATCAGACCAGTTCTGGATTTTTTGCGATGCGTGTAAGAAGTGGTTTCACGGAAAGTGCGTCAAGATCACGCCTGCCCGAGCCGAGCATATGAAGCAGTACACGTGCCCTTTCTGTACTAATAAGAGAGCATGCCCCTGA 795 48.3 MDGGASFKPRTVEEVFRDFKGRRAGMIKALTTDVVEFYQQCDPEKENLCLYGLPNEEWDVNLPAEEVPPELPEPALGINFARDGMQEKDWLLLVAVHGDAWLLSVAFYFGARFGFNKADRKRLFTSINDLPTIFEVVTGSVKKQGKEKPSVSNHGNNKTKSGSKGQGSEAGKYSKEMMPKEEDEGMGLEDEDGEGEGEGEGEGEEEEHSLCWACNGSYTSDQFWIFCDACKKWFHGKCVKITPARAEHMKQYTCPFCTNKRACP 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44172210 44174276 + Bda005780.1 Bda02g00379 2674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00379 264 Pfam PHD-finger 211 260 IPR019787 -
Bda02g00379 264 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 4 264 - -
Bda02g00379 264 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Bda02g00379 264 MobiDBLite consensus disorder prediction 144 202 - -
Bda02g00379 264 MobiDBLite consensus disorder prediction 183 202 - -
Bda02g00379 264 MobiDBLite consensus disorder prediction 150 168 - -
Bda02g00379 264 ProSitePatterns Zinc finger PHD-type signature. 211 257 IPR019786 -
Bda02g00379 264 SUPERFAMILY FYVE/PHD zinc finger 200 263 IPR011011 -
Bda02g00379 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 259 IPR013083 -
Bda02g00379 264 CDD PHD_AL_plant 210 260 IPR044104 -
Bda02g00379 264 ProSiteProfiles Zinc finger PHD-type profile. 208 260 IPR019787 -
Bda02g00379 264 PANTHER CPG BINDING PROTEIN 4 264 IPR045104 GO:0006355|GO:0042393
Bda02g00379 264 SMART PHD_3 210 258 IPR001965 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00379 Bda11g01029 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00379 Bda-Chr2:44172210 Bda11g01029 Bda-Chr11:10012004 4.78E-117 dispersed
Bda02g00379 Bda-Chr2:44172210 Bda01g01999 Bda-Chr1:56332600 1.09E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15543 PF12165 Alfin 9.70E-67 No_clan Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00379 - - cpap:110817645 410.994