Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda02g00379 | ATGGACGGAGGGGCTTCATTCAAACCTCGCACGGTGGAGGAAGTTTTTAGGGACTTTAAGGGTCGTCGAGCTGGCATGATTAAAGCTCTTACCACTGATGTTGTAGAATTTTATCAGCAGTGTGACCCTGAGAAGGAGAATCTTTGCCTGTATGGATTGCCTAACGAAGAGTGGGACGTCAATTTACCTGCTGAAGAAGTGCCTCCAGAACTCCCAGAGCCTGCTCTGGGTATCAATTTTGCAAGAGATGGAATGCAAGAAAAGGATTGGCTGTTACTGGTTGCAGTTCATGGCGATGCTTGGTTGCTCTCCGTAGCTTTCTATTTTGGTGCCAGATTTGGTTTCAACAAAGCTGACAGGAAACGTCTTTTCACGTCGATAAATGATCTACCGACTATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAAGGGAAAGAGAAGCCATCAGTTTCAAATCATGGCAACAACAAAACCAAATCAGGCTCAAAAGGGCAAGGATCTGAAGCGGGAAAATATTCGAAGGAGATGATGCCAAAGGAGGAGGACGAGGGAATGGGATTGGAGGATGAAGATGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGAGGAGGAGGAGCATTCCTTATGTTGGGCCTGTAATGGGAGCTATACATCAGACCAGTTCTGGATTTTTTGCGATGCGTGTAAGAAGTGGTTTCACGGAAAGTGCGTCAAGATCACGCCTGCCCGAGCCGAGCATATGAAGCAGTACACGTGCCCTTTCTGTACTAATAAGAGAGCATGCCCCTGA | 795 | 48.3 | MDGGASFKPRTVEEVFRDFKGRRAGMIKALTTDVVEFYQQCDPEKENLCLYGLPNEEWDVNLPAEEVPPELPEPALGINFARDGMQEKDWLLLVAVHGDAWLLSVAFYFGARFGFNKADRKRLFTSINDLPTIFEVVTGSVKKQGKEKPSVSNHGNNKTKSGSKGQGSEAGKYSKEMMPKEEDEGMGLEDEDGEGEGEGEGEGEEEEHSLCWACNGSYTSDQFWIFCDACKKWFHGKCVKITPARAEHMKQYTCPFCTNKRACP | 264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 44172210 | 44174276 | + | Bda005780.1 | Bda02g00379 | 2674 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda02g00379 | 264 | Pfam | PHD-finger | 211 | 260 | IPR019787 | - | |
Bda02g00379 | 264 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 4 | 264 | - | - | |
Bda02g00379 | 264 | Pfam | Alfin | 11 | 139 | IPR021998 | GO:0006355|GO:0042393 | |
Bda02g00379 | 264 | MobiDBLite | consensus disorder prediction | 144 | 202 | - | - | |
Bda02g00379 | 264 | MobiDBLite | consensus disorder prediction | 183 | 202 | - | - | |
Bda02g00379 | 264 | MobiDBLite | consensus disorder prediction | 150 | 168 | - | - | |
Bda02g00379 | 264 | ProSitePatterns | Zinc finger PHD-type signature. | 211 | 257 | IPR019786 | - | |
Bda02g00379 | 264 | SUPERFAMILY | FYVE/PHD zinc finger | 200 | 263 | IPR011011 | - | |
Bda02g00379 | 264 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 259 | IPR013083 | - | |
Bda02g00379 | 264 | CDD | PHD_AL_plant | 210 | 260 | IPR044104 | - | |
Bda02g00379 | 264 | ProSiteProfiles | Zinc finger PHD-type profile. | 208 | 260 | IPR019787 | - | |
Bda02g00379 | 264 | PANTHER | CPG BINDING PROTEIN | 4 | 264 | IPR045104 | GO:0006355|GO:0042393 | |
Bda02g00379 | 264 | SMART | PHD_3 | 210 | 258 | IPR001965 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda02g00379 | Bda11g01029 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda02g00379 | Bda-Chr2:44172210 | Bda11g01029 | Bda-Chr11:10012004 | 4.78E-117 | dispersed | |
Bda02g00379 | Bda-Chr2:44172210 | Bda01g01999 | Bda-Chr1:56332600 | 1.09E-125 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15543 | PF12165 | Alfin | 9.70E-67 | No_clan | Bda | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda02g00379 | - | - | cpap:110817645 | 410.994 |