Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00390 ATGGAAAATATTTCTACTGTTAGAGGTGATATCTCAGAAGAAGGGACGAGGAAATCAGTTCCGTTTTCTAGGAAAGCACCTCTCGGTCCACCTCCGTTGTGTTCTATTTGTCAGCACAAGGCTCCGGTATTTGGAAATCCTCCCAGATGGTTCACTTTCTCTGAGTTAGAGCTAGCCACTGGTGGATTTTCAAGGGCGAATTTCTTGGCTGAAGGTGGATTTGGCTCTGTCCATCGAGGCGTCTTACCAGATGGCCAAGTAGTTGCTGTCAAGCAATATAAACTGGCTAGTTCCCAAGGTGATCGAGAGTTTTGCTCCGAAGTTGAGGTCTTAAGCTGTGCTCAGCATCGAAATGTTGTTTTGCTGATTGGCTTCTGTGTAGAGGATGGAAGAAGGTTGCTTGTGTATGAGTACATTTGCAATGGCTCTTTGGATTCTCATCTTTATGGGCGAAATGGTGATCCATTGGAATGGTCAGCTAGGCAGAAGATTGCCGTGGGAGCAGCTCGAGGATTGAGATACCTTCACGAAGAGTGTCGAGTGGGCTGCATTGTGCACCGTGATTTACGGCCTAACAATATTCTTCTTACCCACGATTTCGAACCATTAGTTGGAGATTTTGGGCTGGCAAGGTGGCAACCAAATGGAGACTTGGGCGTGGAAACTAGAATACTTGGAACATTTGGGTACTTGGCTCCAGAATATGCTCAGAGCGGCCAAATAACAGAAAAAGCCGATGTGTATTCCTTTGGAGTAGTTTTACTGGAACTAATAGCCGGTCGGAAAGCGATCGATCTAAATCGTCCTAAAGGCCAGCAATCCCTGACCGAGTGGGCTCGGGCTTTGCTTAAAAGAGACGTCGTCGATGAACTAGTCGATCCACGCCTAAGGCACTGTTATCTGAACGAGGAAGTTCGTCAGATGCTGCAATGTGCGTCCTTGTGCATCCGGCACGATCCTTATTCCCGACCTCGCATGTCACAGGTGCTTCGGATGCTGGAAGGCGACGTCTTCGTGTAA 1020 47.75 MENISTVRGDISEEGTRKSVPFSRKAPLGPPPLCSICQHKAPVFGNPPRWFTFSELELATGGFSRANFLAEGGFGSVHRGVLPDGQVVAVKQYKLASSQGDREFCSEVEVLSCAQHRNVVLLIGFCVEDGRRLLVYEYICNGSLDSHLYGRNGDPLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDLRPNNILLTHDFEPLVGDFGLARWQPNGDLGVETRILGTFGYLAPEYAQSGQITEKADVYSFGVVLLELIAGRKAIDLNRPKGQQSLTEWARALLKRDVVDELVDPRLRHCYLNEEVRQMLQCASLCIRHDPYSRPRMSQVLRMLEGDVFV 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44427014 44428471 - Bda005796.1 Bda02g00390 2685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00390 339 ProSitePatterns Tyrosine protein kinases specific active-site signature. 184 196 IPR008266 GO:0004672|GO:0006468
Bda02g00390 339 Gene3D Transferase(Phosphotransferase) domain 1 139 337 - -
Bda02g00390 339 Gene3D Phosphorylase Kinase; domain 1 35 138 - -
Bda02g00390 339 Pfam Protein tyrosine and serine/threonine kinase 67 333 IPR001245 GO:0004672|GO:0006468
Bda02g00390 339 ProSiteProfiles Protein kinase domain profile. 63 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda02g00390 339 SUPERFAMILY Protein kinase-like (PK-like) 47 333 IPR011009 -
Bda02g00390 339 SMART tyrkin_6 63 333 IPR020635 GO:0004713|GO:0006468
Bda02g00390 339 PANTHER OS01G0253100 PROTEIN 22 338 IPR045271 GO:0004714|GO:0006468
Bda02g00390 339 PIRSF ILK 34 336 - -
Bda02g00390 339 PANTHER OS01G0602800 PROTEIN 22 338 - -
Bda02g00390 339 CDD STKc_IRAK 69 335 - -
Bda02g00390 339 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00390 Bda-Chr2:44427014 Bda12g01075 Bda-Chr12:42471649 0 dispersed
Bda02g00390 Bda-Chr2:44427014 Bda11g01113 Bda-Chr11:11007129 2.74E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69496 PF07714 PK_Tyr_Ser-Thr 1.70E-42 CL0016 Bda PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00390 - - cit:102622957 585.489