Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00398 ATGGAGAAGGAACCCGGAGCAGATTTTGATGTGGAGTTGTCTGACAGTCCTGTGGATTCTTTCTCCTCCGACCATTTTCGGATGTTCGATTTCAAGGTGAAGAAATGCGCTCGCGGCAGTTCACACGATTGGACCCAGTGTCCGTACGCTCATCCCGGGGAGAAAGCCCGCCGGAGAGACTTGAGGAAGTATCACTACTCCGGTACTACTTGCCCGGAGTTCCGGAAAGGAATTTGTAAGAGGGGTGATTTGTGCGAGTTCGCGCATGGCGTTTTCGAGAGCTGGCTCCACCCTGCTCGTTATCGAACGCAGCCATGCAAGGATGGGACGAGCTGTAGAAGATTGGTCTGCTTCTTCGCTCACACTCCTCAGCAGCTCAGAGTACTCCCGGAGCAGAACTCCAGAAGTTCCACTGATGGGTCGCCGGCAATTGAAGCTTCGTTCGCTAGTTCGTTTCCTTTTTTGGCCTCGCCGATCTCTGTTTCTCCTCTAGCGACTCCGATTGAGTCTCCACCACTGTCGCCGATGAGCCGTTCTCTAGGTTCAACGCCCATGAAAGAAATGACGTCATCTCTTCGGAGTCTGCAGCTTTGCAAGGTCAAGTCTTTACCTTCTTCAAGAAAAGTTCAAGTGGGGTCTCCTGTTTTCGGATCTCCGACCCGAAACGGGTACTTCAGTCTCCCTACTACCCCGACCCGGATTCGATCGTTTTCTGAAATCAGACGCCTCGACTCTTGGGAAGAACATTTCGAAGAGGAGCCAGTGATGGAGCGGGTCGAATCGGGGAAAGATCTGAGAGCAAAAATGTACGAGAAGCTTAAAAAGGAAAATTCTCTGGATCGAATCGATCCATCCCCTTCATTTGACCCGGAACTCTATCGGGTTACAAAGTCCATCAGTTGA 903 51.38 MEKEPGADFDVELSDSPVDSFSSDHFRMFDFKVKKCARGSSHDWTQCPYAHPGEKARRRDLRKYHYSGTTCPEFRKGICKRGDLCEFAHGVFESWLHPARYRTQPCKDGTSCRRLVCFFAHTPQQLRVLPEQNSRSSTDGSPAIEASFASSFPFLASPISVSPLATPIESPPLSPMSRSLGSTPMKEMTSSLRSLQLCKVKSLPSSRKVQVGSPVFGSPTRNGYFSLPTTPTRIRSFSEIRRLDSWEEHFEEEPVMERVESGKDLRAKMYEKLKKENSLDRIDPSPSFDPELYRVTKSIS 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44523605 44524507 - Bda005804.1 Bda02g00398 2693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00398 300 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 70 90 IPR000571 GO:0046872
Bda02g00398 300 SMART c3hfinal6 65 91 IPR000571 GO:0046872
Bda02g00398 300 SMART c3hfinal6 100 123 IPR000571 GO:0046872
Bda02g00398 300 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 12 296 - -
Bda02g00398 300 PANTHER UNKEMPT FAMILY MEMBER 12 296 IPR045234 -
Bda02g00398 300 Gene3D - 67 129 - -
Bda02g00398 300 SUPERFAMILY CCCH zinc finger 64 93 IPR036855 GO:0046872
Bda02g00398 300 ProSiteProfiles Zinc finger C3H1-type profile. 66 92 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g02031 Bda02g00398 CCT
Bda01g02031 Bda02g00398 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02031 Bda-Chr1:56597951 Bda02g00398 Bda-Chr2:44523605 6.04E-113 dispersed
Bda02g00398 Bda-Chr2:44523605 Bda13g00671 Bda-Chr13:7638333 5.83E-60 dispersed
Bda11g01075 Bda-Chr11:10492883 Bda02g00398 Bda-Chr2:44523605 2.98E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15544 PF00642 zf-CCCH 1.00E-06 CL0537 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00398 - - jre:109010264 395.586