Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda02g00398 | ATGGAGAAGGAACCCGGAGCAGATTTTGATGTGGAGTTGTCTGACAGTCCTGTGGATTCTTTCTCCTCCGACCATTTTCGGATGTTCGATTTCAAGGTGAAGAAATGCGCTCGCGGCAGTTCACACGATTGGACCCAGTGTCCGTACGCTCATCCCGGGGAGAAAGCCCGCCGGAGAGACTTGAGGAAGTATCACTACTCCGGTACTACTTGCCCGGAGTTCCGGAAAGGAATTTGTAAGAGGGGTGATTTGTGCGAGTTCGCGCATGGCGTTTTCGAGAGCTGGCTCCACCCTGCTCGTTATCGAACGCAGCCATGCAAGGATGGGACGAGCTGTAGAAGATTGGTCTGCTTCTTCGCTCACACTCCTCAGCAGCTCAGAGTACTCCCGGAGCAGAACTCCAGAAGTTCCACTGATGGGTCGCCGGCAATTGAAGCTTCGTTCGCTAGTTCGTTTCCTTTTTTGGCCTCGCCGATCTCTGTTTCTCCTCTAGCGACTCCGATTGAGTCTCCACCACTGTCGCCGATGAGCCGTTCTCTAGGTTCAACGCCCATGAAAGAAATGACGTCATCTCTTCGGAGTCTGCAGCTTTGCAAGGTCAAGTCTTTACCTTCTTCAAGAAAAGTTCAAGTGGGGTCTCCTGTTTTCGGATCTCCGACCCGAAACGGGTACTTCAGTCTCCCTACTACCCCGACCCGGATTCGATCGTTTTCTGAAATCAGACGCCTCGACTCTTGGGAAGAACATTTCGAAGAGGAGCCAGTGATGGAGCGGGTCGAATCGGGGAAAGATCTGAGAGCAAAAATGTACGAGAAGCTTAAAAAGGAAAATTCTCTGGATCGAATCGATCCATCCCCTTCATTTGACCCGGAACTCTATCGGGTTACAAAGTCCATCAGTTGA | 903 | 51.38 | MEKEPGADFDVELSDSPVDSFSSDHFRMFDFKVKKCARGSSHDWTQCPYAHPGEKARRRDLRKYHYSGTTCPEFRKGICKRGDLCEFAHGVFESWLHPARYRTQPCKDGTSCRRLVCFFAHTPQQLRVLPEQNSRSSTDGSPAIEASFASSFPFLASPISVSPLATPIESPPLSPMSRSLGSTPMKEMTSSLRSLQLCKVKSLPSSRKVQVGSPVFGSPTRNGYFSLPTTPTRIRSFSEIRRLDSWEEHFEEEPVMERVESGKDLRAKMYEKLKKENSLDRIDPSPSFDPELYRVTKSIS | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 44523605 | 44524507 | - | Bda005804.1 | Bda02g00398 | 2693 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda02g00398 | 300 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 70 | 90 | IPR000571 | GO:0046872 | |
Bda02g00398 | 300 | SMART | c3hfinal6 | 65 | 91 | IPR000571 | GO:0046872 | |
Bda02g00398 | 300 | SMART | c3hfinal6 | 100 | 123 | IPR000571 | GO:0046872 | |
Bda02g00398 | 300 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 12 | 296 | - | - | |
Bda02g00398 | 300 | PANTHER | UNKEMPT FAMILY MEMBER | 12 | 296 | IPR045234 | - | |
Bda02g00398 | 300 | Gene3D | - | 67 | 129 | - | - | |
Bda02g00398 | 300 | SUPERFAMILY | CCCH zinc finger | 64 | 93 | IPR036855 | GO:0046872 | |
Bda02g00398 | 300 | ProSiteProfiles | Zinc finger C3H1-type profile. | 66 | 92 | IPR000571 | GO:0046872 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bda01g02031 | Bda02g00398 | CCT | |
Bda01g02031 | Bda02g00398 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g02031 | Bda-Chr1:56597951 | Bda02g00398 | Bda-Chr2:44523605 | 6.04E-113 | dispersed | |
Bda02g00398 | Bda-Chr2:44523605 | Bda13g00671 | Bda-Chr13:7638333 | 5.83E-60 | dispersed | |
Bda11g01075 | Bda-Chr11:10492883 | Bda02g00398 | Bda-Chr2:44523605 | 2.98E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15544 | PF00642 | zf-CCCH | 1.00E-06 | CL0537 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda02g00398 | - | - | jre:109010264 | 395.586 |