Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00418 ATGGCGGACCAGACAATCTCTGAGTCTGAGTCAAGCTGCACAAACCCTGCTTCATCTTCCTCGCCGCCGGAAGAATCGACGGGTCAGTTGCCGCAGAAACGGCAGAAACGATCAGCTTCTGATACCGACAGTAAACATCCCGTTTTCCGTGGAGTCCGAAAGCGAGCTTGGGGAAAATGGGTGACTGAAATCCGAGAACCCAGAAAGAAAAGTCGGATCTGGCTCGGTACTTTTGCCACACCGGAAATGGCTGCTCGAGCTCACGACGTCGCCGCTTTAAGCATCAAAGGAAAGTCCGCCATACTCAACTTCCCAGAACACGCTGGAGCTCTTCCCCGCCCGGCTTCCAACTCTCCTAGAGATATTCAAGTCGCCGCTGCTAAAGCCGCTTCAATGGATTTTCCCGTTCCTTCACCACCATCTTCGTCGACGCCGGAGATCTCCCAGTCTTCTTCTTCCTCTTCCTCTTCCTCCTCGTCTTCCTTGTCATCTTTAGAAGAATCCACGCCAGAGGAGCTCAGTGAGATAGTACAGCTACCGAATCTCGGAACGAGCTACGACTCGCCGGACTCCGGCAACGAGTTGGTGTTCTCGGACTCAATGGAAGGTTGGCTCTATCCTTACCCATGGTATCAAAGCATAAATGGAGATGAAGTCTTCTGTTTATCAATGGCGGAAAATCCAACAGTTTTCGAAGCTTCCTTGTGGCAACATTAA 717 51.46 MADQTISESESSCTNPASSSSPPEESTGQLPQKRQKRSASDTDSKHPVFRGVRKRAWGKWVTEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGKSAILNFPEHAGALPRPASNSPRDIQVAAAKAASMDFPVPSPPSSSTPEISQSSSSSSSSSSSSLSSLEESTPEELSEIVQLPNLGTSYDSPDSGNELVFSDSMEGWLYPYPWYQSINGDEVFCLSMAENPTVFEASLWQH 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 44826486 44827202 - Bda005829.1 Bda02g00418 2713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00418 238 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 7 218 - -
Bda02g00418 238 MobiDBLite consensus disorder prediction 1 35 - -
Bda02g00418 238 MobiDBLite consensus disorder prediction 132 175 - -
Bda02g00418 238 MobiDBLite consensus disorder prediction 36 52 - -
Bda02g00418 238 MobiDBLite consensus disorder prediction 1 52 - -
Bda02g00418 238 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Bda02g00418 238 CDD AP2 49 107 IPR001471 GO:0003700|GO:0006355
Bda02g00418 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 218 - -
Bda02g00418 238 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Bda02g00418 238 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Bda02g00418 238 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Bda02g00418 238 SUPERFAMILY DNA-binding domain 48 106 IPR016177 GO:0003677
Bda02g00418 238 MobiDBLite consensus disorder prediction 143 175 - -
Bda02g00418 238 Pfam AP2 domain 47 97 IPR001471 GO:0003700|GO:0006355
Bda02g00418 238 Gene3D AP2/ERF domain 48 107 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g02051 Bda-Chr1:56777298 Bda02g00418 Bda-Chr2:44826486 1.40E-58 dispersed
Bda02g00418 Bda-Chr2:44826486 Bda11g01093 Bda-Chr11:10692654 2.07E-62 dispersed
Bda03g00351 Bda-Chr3:2967247 Bda02g00418 Bda-Chr2:44826486 6.83E-35 dispersed
Bda03g00430 Bda-Chr3:3710423 Bda02g00418 Bda-Chr2:44826486 1.15E-59 dispersed
Bda08g00591 Bda-Chr8:6021313 Bda02g00418 Bda-Chr2:44826486 2.95E-42 dispersed
Bda15g00742 Bda-Chr15:10900169 Bda02g00418 Bda-Chr2:44826486 2.24E-34 dispersed
Bda02g00418 Bda-Chr2:44826486 Bda02g00425 Bda-Chr2:44879849 2.04E-107 proximal
Bda08g00099 Bda-Chr8:879837 Bda02g00418 Bda-Chr2:44826486 2.28E-12 transposed
Bda02g00418 Bda-Chr2:44826486 Bda09g01132 Bda-Chr9:41989133 4.81E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15545 PF00847 AP2 2.40E-14 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00418 K09286 - pvy:116108531 224.172