Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda02g00457 | ATGAGAGGGGAAGTGCAATTAGAGCCACCGAGTACGCAAATTGCAAGTGACTCTGATCCTCTACTTGAGAATCAGGAGGATTTATCTCCGGGGAGCTCAAGTGAGATTAAAGAGGATGACAATGAAGCTGGCTCCATTCCGTGTTGTCGCATCTGCCTTGAGAGCGATTCTGAACCTGATGATGACTTGATATCCCCGTGCAAATGCAAAGGGACTCAGCAGTTTGTTCATCGCTCGTGCCTTGATCACTGGCGTTCAGTTAAGGAAGGGTTTGCATTTTCGCATTGCACTACTTGCAAGGCCCAATTTCACCTACGAACTATTTCGTTTGAGGACAACTCATGGCGCAGAGTGAAGTTTAGACTTTTTGTGGCAAGGGATGTTCTCCTTGTTTTTCTTGCTGTACAAACTGTCATTGCTGCAATTGGAGGTTTTGCATATATTACGGACAGAGATGGGGCTTTTAGAAATTCTTTCAGTGATGGATGGGATCGCATTCTGTCCAAACATCCAATACCGTTCTATTATTGTATAGGAGTAATGGCCTTCTTTGTTATGCTTGGTTTTTTTGGGCTCATACTTCATTGCTCCTCCCTGAATAGCAGTGATCCACGAGTAGCAGGGTGCCATAATTGTTGGTATGGGTGGGGAATCTTGGATTGTTTTCCCGCATCTATGGAAGCCTGCTTTGCACTTGTTATTGTATTTGTTGTCATCTTTGCTATTCTTGGCATCGCATATGGTTTCCTAGCTGCAACTATGGCCATTCAGAGGATCTGGCAGAGACACTACCACATTCTCACCAAAAGGGAGCTAACTAAGGAGTACATAGTGGAGGATCTTCATGGTTGCTATACACCTCCAAAATTGGATCCAGGACACGAAGAACGTCTGAAAATGCTCAAGCTTTTATAA | 915 | 44.26 | MRGEVQLEPPSTQIASDSDPLLENQEDLSPGSSSEIKEDDNEAGSIPCCRICLESDSEPDDDLISPCKCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRTISFEDNSWRRVKFRLFVARDVLLVFLAVQTVIAAIGGFAYITDRDGAFRNSFSDGWDRILSKHPIPFYYCIGVMAFFVMLGFFGLILHCSSLNSSDPRVAGCHNCWYGWGILDCFPASMEACFALVIVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGCYTPPKLDPGHEERLKMLKLL | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 45315215 | 45317382 | + | Bda005873.1 | Bda02g00457 | 2752 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda02g00457 | 304 | SMART | ringv_2 | 48 | 100 | IPR011016 | GO:0008270 | |
Bda02g00457 | 304 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 304 | - | - | |
Bda02g00457 | 304 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Bda02g00457 | 304 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 112 | IPR013083 | - | |
Bda02g00457 | 304 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 41 | 106 | IPR011016 | GO:0008270 | |
Bda02g00457 | 304 | Pfam | RING-variant domain | 49 | 99 | IPR011016 | GO:0008270 | |
Bda02g00457 | 304 | SUPERFAMILY | RING/U-box | 47 | 104 | - | - | |
Bda02g00457 | 304 | PANTHER | RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN | 1 | 304 | - | - | |
Bda02g00457 | 304 | CDD | RING_CH-C4HC3_MARCH | 49 | 100 | - | - | |
Bda02g00457 | 304 | MobiDBLite | consensus disorder prediction | 9 | 31 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda02g00457 | Bda-Chr2:45315215 | Bda04g00071 | Bda-Chr4:1546106 | 6.23E-66 | dispersed | |
Bda02g00457 | Bda-Chr2:45315215 | Bda05g00386 | Bda-Chr5:48664744 | 3.94E-06 | transposed | |
Bda02g00457 | Bda-Chr2:45315215 | Bda12g00067 | Bda-Chr12:520749 | 3.85E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda02g00457 | - | - | zju:107432369 | 561.222 |