Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00457 ATGAGAGGGGAAGTGCAATTAGAGCCACCGAGTACGCAAATTGCAAGTGACTCTGATCCTCTACTTGAGAATCAGGAGGATTTATCTCCGGGGAGCTCAAGTGAGATTAAAGAGGATGACAATGAAGCTGGCTCCATTCCGTGTTGTCGCATCTGCCTTGAGAGCGATTCTGAACCTGATGATGACTTGATATCCCCGTGCAAATGCAAAGGGACTCAGCAGTTTGTTCATCGCTCGTGCCTTGATCACTGGCGTTCAGTTAAGGAAGGGTTTGCATTTTCGCATTGCACTACTTGCAAGGCCCAATTTCACCTACGAACTATTTCGTTTGAGGACAACTCATGGCGCAGAGTGAAGTTTAGACTTTTTGTGGCAAGGGATGTTCTCCTTGTTTTTCTTGCTGTACAAACTGTCATTGCTGCAATTGGAGGTTTTGCATATATTACGGACAGAGATGGGGCTTTTAGAAATTCTTTCAGTGATGGATGGGATCGCATTCTGTCCAAACATCCAATACCGTTCTATTATTGTATAGGAGTAATGGCCTTCTTTGTTATGCTTGGTTTTTTTGGGCTCATACTTCATTGCTCCTCCCTGAATAGCAGTGATCCACGAGTAGCAGGGTGCCATAATTGTTGGTATGGGTGGGGAATCTTGGATTGTTTTCCCGCATCTATGGAAGCCTGCTTTGCACTTGTTATTGTATTTGTTGTCATCTTTGCTATTCTTGGCATCGCATATGGTTTCCTAGCTGCAACTATGGCCATTCAGAGGATCTGGCAGAGACACTACCACATTCTCACCAAAAGGGAGCTAACTAAGGAGTACATAGTGGAGGATCTTCATGGTTGCTATACACCTCCAAAATTGGATCCAGGACACGAAGAACGTCTGAAAATGCTCAAGCTTTTATAA 915 44.26 MRGEVQLEPPSTQIASDSDPLLENQEDLSPGSSSEIKEDDNEAGSIPCCRICLESDSEPDDDLISPCKCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRTISFEDNSWRRVKFRLFVARDVLLVFLAVQTVIAAIGGFAYITDRDGAFRNSFSDGWDRILSKHPIPFYYCIGVMAFFVMLGFFGLILHCSSLNSSDPRVAGCHNCWYGWGILDCFPASMEACFALVIVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGCYTPPKLDPGHEERLKMLKLL 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45315215 45317382 + Bda005873.1 Bda02g00457 2752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00457 304 SMART ringv_2 48 100 IPR011016 GO:0008270
Bda02g00457 304 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 304 - -
Bda02g00457 304 MobiDBLite consensus disorder prediction 1 42 - -
Bda02g00457 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 112 IPR013083 -
Bda02g00457 304 ProSiteProfiles Zinc finger RING-CH-type profile. 41 106 IPR011016 GO:0008270
Bda02g00457 304 Pfam RING-variant domain 49 99 IPR011016 GO:0008270
Bda02g00457 304 SUPERFAMILY RING/U-box 47 104 - -
Bda02g00457 304 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 304 - -
Bda02g00457 304 CDD RING_CH-C4HC3_MARCH 49 100 - -
Bda02g00457 304 MobiDBLite consensus disorder prediction 9 31 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00457 Bda-Chr2:45315215 Bda04g00071 Bda-Chr4:1546106 6.23E-66 dispersed
Bda02g00457 Bda-Chr2:45315215 Bda05g00386 Bda-Chr5:48664744 3.94E-06 transposed
Bda02g00457 Bda-Chr2:45315215 Bda12g00067 Bda-Chr12:520749 3.85E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00457 - - zju:107432369 561.222