Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00473 ATGACGTCACAACTTGGAGCGGGACATGCAATGGCACCACCGGCTTATCCATATCCTGATCCTTACTACAGAAGCATCTTTGCTCCGTATGATGGACAACCATATCCTCCTCAGCCTTATGGTGTTCAACCTATGGTTCATCTCCAGTTAATGGGAATTCAGCAAGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTAAATGCCAAACAGTATCACGGCATCATGAGGAGACGTCAATCTCGTGCAAAAGCTGAATCAGAGAATAAAGCATTGAAGTCTAGGAAGCCATATATGCACGAATCTCGTCATTTACACGCATTGAGAAGAGCTAGAGGATGTGGTGGTAGGTTTCTCAAGGCAAAGAAAAATGAAAACCAATCAAATGAGGCGATATCAGGCGATGAATTACAAACCAACTTGAACCTCAACAACAATAAAAATGATCCTGCTTCCTCAGATAGTGCATCCTAA 486 44.03 MTSQLGAGHAMAPPAYPYPDPYYRSIFAPYDGQPYPPQPYGVQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKALKSRKPYMHESRHLHALRRARGCGGRFLKAKKNENQSNEAISGDELQTNLNLNNNKNDPASSDSAS 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45632114 45634401 - Bda005890.1 Bda02g00473 2768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00473 161 Gene3D - 65 126 - -
Bda02g00473 161 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 3 148 - -
Bda02g00473 161 PRINTS CCAAT-binding transcription factor subunit B signature 68 90 IPR001289 GO:0003700|GO:0006355
Bda02g00473 161 PRINTS CCAAT-binding transcription factor subunit B signature 99 122 IPR001289 GO:0003700|GO:0006355
Bda02g00473 161 SMART cbf3 64 125 IPR001289 GO:0003700|GO:0006355
Bda02g00473 161 MobiDBLite consensus disorder prediction 83 102 - -
Bda02g00473 161 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 67 122 IPR001289 GO:0003700|GO:0006355
Bda02g00473 161 ProSitePatterns NF-YA/HAP2 subunit signature. 70 90 IPR018362 GO:0003677|GO:0016602
Bda02g00473 161 MobiDBLite consensus disorder prediction 126 161 - -
Bda02g00473 161 MobiDBLite consensus disorder prediction 81 107 - -
Bda02g00473 161 ProSiteProfiles NF-YA/HAP2 family profile. 65 125 IPR001289 GO:0003700|GO:0006355
Bda02g00473 161 MobiDBLite consensus disorder prediction 129 161 - -
Bda02g00473 161 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 148 IPR001289 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00473 K08064 NFYA, HAP2; nuclear transcription factor Y, alpha - jre:109011209 244.973
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00421 Bda-Chr1:30753069 Bda02g00473 Bda-Chr2:45632114 2.01E-24 dispersed
Bda02g00473 Bda-Chr2:45632114 Bda12g00605 Bda-Chr12:20651392 3.27E-30 dispersed
Bda11g01030 Bda-Chr11:10015592 Bda02g00473 Bda-Chr2:45632114 2.76E-14 dispersed
Bda09g01353 Bda-Chr9:45323441 Bda02g00473 Bda-Chr2:45632114 1.26E-33 transposed
Bda02g00473 Bda-Chr2:45632114 Bda09g01189 Bda-Chr9:42826984 3.44E-98 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda02g00473 . 16 127 CCAAT-HAP2 Transcription Factor Family AT2G34720 68.1 3.5e-38 154.8
Bda09g01189 . 5 171 CCAAT-HAP2 Transcription Factor Family AT1G30500 56.6 1.7e-44 176.0
Bda02g00473 . 6 129 CCAAT-HAP2 Transcription Factor Family AT1G30500 70.3 2.2e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004501 2 1 2 2 2 1 2 1 1 1 1 2 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15550 PF02045 CBFB_NFYA 3.30E-26 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda02g00473 Bda_Chr02 FPKM 0.0 0.0 0.0 0.0 9.904699 7.362378 11.507076 0.0 0.0