Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda02g00473 | ATGACGTCACAACTTGGAGCGGGACATGCAATGGCACCACCGGCTTATCCATATCCTGATCCTTACTACAGAAGCATCTTTGCTCCGTATGATGGACAACCATATCCTCCTCAGCCTTATGGTGTTCAACCTATGGTTCATCTCCAGTTAATGGGAATTCAGCAAGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTAAATGCCAAACAGTATCACGGCATCATGAGGAGACGTCAATCTCGTGCAAAAGCTGAATCAGAGAATAAAGCATTGAAGTCTAGGAAGCCATATATGCACGAATCTCGTCATTTACACGCATTGAGAAGAGCTAGAGGATGTGGTGGTAGGTTTCTCAAGGCAAAGAAAAATGAAAACCAATCAAATGAGGCGATATCAGGCGATGAATTACAAACCAACTTGAACCTCAACAACAATAAAAATGATCCTGCTTCCTCAGATAGTGCATCCTAA | 486 | 44.03 | MTSQLGAGHAMAPPAYPYPDPYYRSIFAPYDGQPYPPQPYGVQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKALKSRKPYMHESRHLHALRRARGCGGRFLKAKKNENQSNEAISGDELQTNLNLNNNKNDPASSDSAS | 161 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 45632114 | 45634401 | - | Bda005890.1 | Bda02g00473 | 2768 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda02g00473 | 161 | Gene3D | - | 65 | 126 | - | - | |
Bda02g00473 | 161 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 | 3 | 148 | - | - | |
Bda02g00473 | 161 | PRINTS | CCAAT-binding transcription factor subunit B signature | 68 | 90 | IPR001289 | GO:0003700|GO:0006355 | |
Bda02g00473 | 161 | PRINTS | CCAAT-binding transcription factor subunit B signature | 99 | 122 | IPR001289 | GO:0003700|GO:0006355 | |
Bda02g00473 | 161 | SMART | cbf3 | 64 | 125 | IPR001289 | GO:0003700|GO:0006355 | |
Bda02g00473 | 161 | MobiDBLite | consensus disorder prediction | 83 | 102 | - | - | |
Bda02g00473 | 161 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 67 | 122 | IPR001289 | GO:0003700|GO:0006355 | |
Bda02g00473 | 161 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 70 | 90 | IPR018362 | GO:0003677|GO:0016602 | |
Bda02g00473 | 161 | MobiDBLite | consensus disorder prediction | 126 | 161 | - | - | |
Bda02g00473 | 161 | MobiDBLite | consensus disorder prediction | 81 | 107 | - | - | |
Bda02g00473 | 161 | ProSiteProfiles | NF-YA/HAP2 family profile. | 65 | 125 | IPR001289 | GO:0003700|GO:0006355 | |
Bda02g00473 | 161 | MobiDBLite | consensus disorder prediction | 129 | 161 | - | - | |
Bda02g00473 | 161 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 3 | 148 | IPR001289 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda01g00421 | Bda-Chr1:30753069 | Bda02g00473 | Bda-Chr2:45632114 | 2.01E-24 | dispersed | |
Bda02g00473 | Bda-Chr2:45632114 | Bda12g00605 | Bda-Chr12:20651392 | 3.27E-30 | dispersed | |
Bda11g01030 | Bda-Chr11:10015592 | Bda02g00473 | Bda-Chr2:45632114 | 2.76E-14 | dispersed | |
Bda09g01353 | Bda-Chr9:45323441 | Bda02g00473 | Bda-Chr2:45632114 | 1.26E-33 | transposed | |
Bda02g00473 | Bda-Chr2:45632114 | Bda09g01189 | Bda-Chr9:42826984 | 3.44E-98 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15550 | PF02045 | CBFB_NFYA | 3.30E-26 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda02g00473 | K08064 | - | jre:109011209 | 244.973 |