Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00473 ATGACGTCACAACTTGGAGCGGGACATGCAATGGCACCACCGGCTTATCCATATCCTGATCCTTACTACAGAAGCATCTTTGCTCCGTATGATGGACAACCATATCCTCCTCAGCCTTATGGTGTTCAACCTATGGTTCATCTCCAGTTAATGGGAATTCAGCAAGCTGGAGTGCCTTTGCCATCAGATGCAGTGGAGGAGCCTGTCTTTGTAAATGCCAAACAGTATCACGGCATCATGAGGAGACGTCAATCTCGTGCAAAAGCTGAATCAGAGAATAAAGCATTGAAGTCTAGGAAGCCATATATGCACGAATCTCGTCATTTACACGCATTGAGAAGAGCTAGAGGATGTGGTGGTAGGTTTCTCAAGGCAAAGAAAAATGAAAACCAATCAAATGAGGCGATATCAGGCGATGAATTACAAACCAACTTGAACCTCAACAACAATAAAAATGATCCTGCTTCCTCAGATAGTGCATCCTAA 486 44.03 MTSQLGAGHAMAPPAYPYPDPYYRSIFAPYDGQPYPPQPYGVQPMVHLQLMGIQQAGVPLPSDAVEEPVFVNAKQYHGIMRRRQSRAKAESENKALKSRKPYMHESRHLHALRRARGCGGRFLKAKKNENQSNEAISGDELQTNLNLNNNKNDPASSDSAS 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45632114 45634401 - Bda005890.1 Bda02g00473 2768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00473 161 Gene3D - 65 126 - -
Bda02g00473 161 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 3 148 - -
Bda02g00473 161 PRINTS CCAAT-binding transcription factor subunit B signature 68 90 IPR001289 GO:0003700|GO:0006355
Bda02g00473 161 PRINTS CCAAT-binding transcription factor subunit B signature 99 122 IPR001289 GO:0003700|GO:0006355
Bda02g00473 161 SMART cbf3 64 125 IPR001289 GO:0003700|GO:0006355
Bda02g00473 161 MobiDBLite consensus disorder prediction 83 102 - -
Bda02g00473 161 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 67 122 IPR001289 GO:0003700|GO:0006355
Bda02g00473 161 ProSitePatterns NF-YA/HAP2 subunit signature. 70 90 IPR018362 GO:0003677|GO:0016602
Bda02g00473 161 MobiDBLite consensus disorder prediction 126 161 - -
Bda02g00473 161 MobiDBLite consensus disorder prediction 81 107 - -
Bda02g00473 161 ProSiteProfiles NF-YA/HAP2 family profile. 65 125 IPR001289 GO:0003700|GO:0006355
Bda02g00473 161 MobiDBLite consensus disorder prediction 129 161 - -
Bda02g00473 161 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 148 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00421 Bda-Chr1:30753069 Bda02g00473 Bda-Chr2:45632114 2.01E-24 dispersed
Bda02g00473 Bda-Chr2:45632114 Bda12g00605 Bda-Chr12:20651392 3.27E-30 dispersed
Bda11g01030 Bda-Chr11:10015592 Bda02g00473 Bda-Chr2:45632114 2.76E-14 dispersed
Bda09g01353 Bda-Chr9:45323441 Bda02g00473 Bda-Chr2:45632114 1.26E-33 transposed
Bda02g00473 Bda-Chr2:45632114 Bda09g01189 Bda-Chr9:42826984 3.44E-98 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15550 PF02045 CBFB_NFYA 3.30E-26 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00473 K08064 - jre:109011209 244.973