Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00475 TCAGCTAAAAGGAGATTGAAAGATTTGTTGCTTCAGCAAGATAATCGCTTTTGTGCAGACTGTCATGCTCCAGATCCCAAATGGGCGTCAGCCAATATTGGAGTTTTTGTGTGCTTAAAATGTTGTGGCGTTCACAGGAGCCTTGGTACTCATATTTCAAAGGTATTATCTGTAACATTGGATGAATGGTCTAATGAGGAAATTGATTCCATGATTGAGGTGGGAGGAAATTCTTCTGCTAATTCAATATATGAAGCTTTTATTCCTGAAGGATATTCCAAGCCAAGACCAGATTCTAGCCATGAAGAACGATCGAAATACATTCGGTCTAAATATGAAAAGCAAGACTTTTTGAAACCTAGTTTGCGAATCTTATCAACCAACTCGGGAAGGAGTTCTCTACAAACAAGGCTTTCTAGAAAGATTATGAATAGTTTCCGCAGTAAAAGTTCTTCTCCGAAATTGTTGCAGGAAGGCATGGTTGAGTTTATTGGGTTACTGAAAGTCAAAGTGATTAAAGGCACAAATTTGGCCATTAGGGATATGATGTCAAGCGATCCTTATGTCGTCTTGAATCTTGGAAACCAGACTGCTCAGACAACCGTGAAAAAAAGCAACTTGAATCCCATCTGGAATGAGGAACTCATGCTGTCAGTGCCTCAGGATTTTGGACCCCTCAAATTGCGGGTCTTCGACCACGATACATTTTCAGCAGACGATATCATGGGAGAAGCAGAGATCGACCTGCAGCCGATGATAACATCAGCGACGGCGTTTGGAGACGCAGGAATGTTTGGAAACATGCAGATTGGAAAATGGCTCAAGTCTCATGATAATGCTCTCATAGATGATAGCACTGTCAATATTGTAGACGGGAAGGTTAAACAAGTTGTCTTTCTCAAGCTTCAGAACGTGGAATCAGGAGACTTAGATCTTGAGCTCGAATGGATGCCTCTTGATCAA 963 41.33 SAKRRLKDLLLQQDNRFCADCHAPDPKWASANIGVFVCLKCCGVHRSLGTHISKVLSVTLDEWSNEEIDSMIEVGGNSSANSIYEAFIPEGYSKPRPDSSHEERSKYIRSKYEKQDFLKPSLRILSTNSGRSSLQTRLSRKIMNSFRSKSSSPKLLQEGMVEFIGLLKVKVIKGTNLAIRDMMSSDPYVVLNLGNQTAQTTVKKSNLNPIWNEELMLSVPQDFGPLKLRVFDHDTFSADDIMGEAEIDLQPMITSATAFGDAGMFGNMQIGKWLKSHDNALIDDSTVNIVDGKVKQVVFLKLQNVESGDLDLELEWMPLDQ 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 45647532 45650820 + Bda033076 Bda02g00475 2770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00475 321 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 165 311 IPR035892 -
Bda02g00475 321 PRINTS HIV Rev interacting protein signature 15 34 IPR001164 GO:0005096
Bda02g00475 321 PRINTS HIV Rev interacting protein signature 55 76 IPR001164 GO:0005096
Bda02g00475 321 PRINTS HIV Rev interacting protein signature 34 51 IPR001164 GO:0005096
Bda02g00475 321 Gene3D Arf GTPase activating protein 1 123 IPR038508 -
Bda02g00475 321 Gene3D C2 domain 163 321 IPR035892 -
Bda02g00475 321 ProSiteProfiles ARF GTPase-activating proteins domain profile. 3 117 IPR001164 GO:0005096
Bda02g00475 321 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 1 321 IPR044518 GO:0005096|GO:0005543
Bda02g00475 321 Pfam C2 domain 165 254 IPR000008 -
Bda02g00475 321 SUPERFAMILY ArfGap/RecO-like zinc finger 3 120 IPR037278 -
Bda02g00475 321 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 1 321 - -
Bda02g00475 321 CDD ArfGap 6 112 - -
Bda02g00475 321 SMART arf_gap_3 4 125 IPR001164 GO:0005096
Bda02g00475 321 CDD C2_ArfGAP 164 308 - -
Bda02g00475 321 ProSiteProfiles C2 domain profile. 148 262 IPR000008 -
Bda02g00475 321 SMART C2_3c 166 261 IPR000008 -
Bda02g00475 321 Pfam Putative GTPase activating protein for Arf 4 119 IPR001164 GO:0005096
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00475 Bda09g01192 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00475 Bda-Chr2:45647532 Bda09g00773 Bda-Chr9:14394394 3.98E-40 dispersed
Bda09g00364 Bda-Chr9:4654891 Bda02g00475 Bda-Chr2:45647532 7.85E-26 dispersed
Bda11g00373 Bda-Chr11:4099611 Bda02g00475 Bda-Chr2:45647532 1.92E-17 dispersed
Bda14g00438 Bda-Chr14:3150773 Bda02g00475 Bda-Chr2:45647532 1.78E-119 transposed
Bda02g00475 Bda-Chr2:45647532 Bda09g01192 Bda-Chr9:42845842 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00475 K12486 - zju:107406254 563.148