Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00552 ATGAACGATCTCTTCTCTGGTTCGTTCAAAAAGTATGCAGACCTGAAGCAGCAGGCCTACCTAGACGGCATGGAGGCCGGCAAGGAGAGCATAAATCTCGACAAGTTCTTCGAGGACATCGACAATGTGAAGGAAGACATGAAACAAGTGGAAAAGCTCTACAAGAAACTGCAGGAAGCAAATGAGGAATGCAAAGTCGTCCACAATGCCAAAACCATGAAAGAACTGAGAGCAAGAATGGATCAAGATGCCAGCCAGGTTTTAAAAAGAGTCAAAATGATCAAAGCAAAGCTCGAAGCCCTTGAACGATCAAATGCAGCCCATCGAAGCCTTCCTGGGTGTGGCCCGGGCTCATCTGCCGACAGAACAAGAACCTCGGTAGTAAGTGGATTGGGGAAGAAACTAAAAGACATAATGGATGATTTTCAGAGCTTAAGAAGTAGAATGAATGCAGAATATAAGGAAATTTTTGAAAAGGAAACAAATAATTTTGTATGGGATTACTATGAACCTTGCACTTTTATCTTGTCATTTGCAGTGGCTTCTGAAGGTAAGGAACCTGTACAGATAAAGCTGCACAAATCTTTGAGACTGTGGACCTTCTATGTGGATCTAGAAGAGAGCTTGGGCACCTTGGAGTCCACTAGGGCAGTGTACGAGAGGATACTGGACTTGAGGATTGCCACACCTCAAATAATTATCAATTACGCATTGCTTCTAGAGGAGCACAAGTATTTTGAAGATGCATTCAAGGTGTATGAAAGAGGTGTCAAAATATTTAAATACCCTCATGTTAAAGATATATGGGTAACATATCTATCAAAATTTGTAAAGAGATATGGGAAAGCAAAACTGGAGCGTGCAAGAGAGCTTTTTGAGCATGCTGTTGGAACGGCACCAGCTGAAGCAGTTAAACCTTTATATCTCCAATATGCAAAATTTGAGGAAGATAATGGTTTAGCAAAGCGAGCTATGAAAGTTTATGATCTTGCAACAAAGGCTGTTCCAAACAATGAGAAGCTGAGCATGTATGAGATCTATATAGCTCGTGCAGCTGAAATATTTGGTGTTCCAAAAACAAGAGAAATATATGAGCAGGCTATAGAATCTGGTCTTCCAGACAAGGATGTGAAGACCATGTGCTTGAAGTATTCTGAACTCGAGAAAAGTTTGGGAGAGATAGATCGGGCACGTGGAATATATATATTTGCATCCCAGTTTGCAGATCCTCGTTCTGATGCAGAGTTTTGGAATAAGTGGCATGAATTCGAGGTTCAGCATGGAAACGAGGATACTTTTAGAGAAATGCTCCGAATTAAACGAAGTGTTTCTGCTAGCTATAGCCAGACGCATTTTATTCTTCCGGAGTATTTGATGCAAAAGGATCAGAGCTTGAACCTCGACGAGGCAAAAGACAAATTAAAGCAGGCTGGTATCACAGAAGATGAAATGGCTGCTCTAGAGAGGCAATTAGCTCCTGCAATTGAAGCTGGAGCCAACGACAAAGCCCGGAAAGTAGGCTTTGTGAGTGCAGGAGTGGAGTCACAGGCCGAGGGAGGATTAAAAACTTCTGCAAATCTCGAAGATATTGAGCTGCCAGAAGAAAGTGACTCAGAAGACGACGACAAAGTTGAGATTGCGCAAAAAGATGTTCCATCTGCAGTTTTTGGGGGTCTGATTGGAAAAAGAGATCAGTCTGAGACGGATGAGAAGGGAGAGGATGCTGCTGAATTGAAGCACAAGGAAGATGGCAACAATCTTCTTGGCGCTCTTGAGCGAATAAAAAGGCAAAAACGAACCTGA 1803 42.37 MNDLFSGSFKKYADLKQQAYLDGMEAGKESINLDKFFEDIDNVKEDMKQVEKLYKKLQEANEECKVVHNAKTMKELRARMDQDASQVLKRVKMIKAKLEALERSNAAHRSLPGCGPGSSADRTRTSVVSGLGKKLKDIMDDFQSLRSRMNAEYKEIFEKETNNFVWDYYEPCTFILSFAVASEGKEPVQIKLHKSLRLWTFYVDLEESLGTLESTRAVYERILDLRIATPQIIINYALLLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKAKLERARELFEHAVGTAPAEAVKPLYLQYAKFEEDNGLAKRAMKVYDLATKAVPNNEKLSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYSELEKSLGEIDRARGIYIFASQFADPRSDAEFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQKDQSLNLDEAKDKLKQAGITEDEMAALERQLAPAIEAGANDKARKVGFVSAGVESQAEGGLKTSANLEDIELPEESDSEDDDKVEIAQKDVPSAVFGGLIGKRDQSETDEKGEDAAELKHKEDGNNLLGALERIKRQKRT 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 46377171 46387087 - Bda005973.6 Bda02g00552 2847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00552 600 MobiDBLite consensus disorder prediction 563 594 - -
Bda02g00552 600 Pfam Syntaxin 35 159 IPR006011 GO:0016020
Bda02g00552 600 PANTHER PRE-MRNA SPLICING FACTOR 179 532 IPR045075 GO:0000398
Bda02g00552 600 SMART hat_new_1 167 208 IPR003107 GO:0006396
Bda02g00552 600 SMART hat_new_1 210 242 IPR003107 GO:0006396
Bda02g00552 600 SMART hat_new_1 244 278 IPR003107 GO:0006396
Bda02g00552 600 SMART hat_new_1 355 390 IPR003107 GO:0006396
Bda02g00552 600 SMART hat_new_1 392 426 IPR003107 GO:0006396
Bda02g00552 600 SMART hat_new_1 283 317 IPR003107 GO:0006396
Bda02g00552 600 CDD SynN 33 155 IPR006011 GO:0016020
Bda02g00552 600 Gene3D Tetratricopeptide repeat domain 342 477 IPR011990 GO:0005515
Bda02g00552 600 Coils Coil 84 104 - -
Bda02g00552 600 SMART SynN_4 28 154 IPR006011 GO:0016020
Bda02g00552 600 SUPERFAMILY TPR-like 31 350 IPR011990 GO:0005515
Bda02g00552 600 SUPERFAMILY TPR-like 359 439 IPR011990 GO:0005515
Bda02g00552 600 Coils Coil 470 490 - -
Bda02g00552 600 Gene3D Tetratricopeptide repeat domain 191 333 IPR011990 GO:0005515
Bda02g00552 600 Coils Coil 33 70 - -
Bda02g00552 600 MobiDBLite consensus disorder prediction 515 600 - -
Bda02g00552 600 Gene3D - 28 156 - -
Bda02g00552 600 PANTHER PRE-MRNA-SPLICING FACTOR SYF1 179 532 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00552 Bda-Chr2:46377171 Bda05g01127 Bda-Chr5:59493476 4.62E-44 dispersed
Bda11g01860 Bda-Chr11:53717274 Bda02g00552 Bda-Chr2:46377171 3.89E-27 dispersed
Bda03g00642 Bda-Chr3:5480330 Bda02g00552 Bda-Chr2:46377171 2.57E-07 transposed
Bda13g00658 Bda-Chr13:7534408 Bda02g00552 Bda-Chr2:46377171 1.04E-06 transposed
Bda02g00552 Bda-Chr2:46377171 Bda09g01276 Bda-Chr9:44512231 6.98E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00552 K12867 - qsu:112012449 700.664