Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00603 ATGGAAGCTCGTCTCTCTGTGCTGCTACTGATCGGTCTGTTTTATCTTCTAGCTCTAACCCTCGTTTCATCTTCACCAGTTCAGGACCCTGAATCTGTTGTTCAAGAAGTTCTTACGAGCATCAACAATGCCACCATTAGCAGAAGAAACCTGGGTTATCTCTCGTGTGGTACGGGAAACCCCATTGACGACTGCTGGAGGTGCGACCCCAAGTGGGAGACTAACCGGCAGCGCCTTGCAGACTGCGCTATCGGGTTTGGCAAGCGAGCCATTGGCGGCCGTGACGGGAAAATTTACGTCGTTACAGATCCGACTGATAAAGACGTCGTGAATCCTAAACCGGGTACTCTCCGTCATGCCGTCATCCAAGACGAACCCCTTTGGATCATCTTCAGCCGGGATATGGTCATCAAGCTAAAAGAAGAGCTCATCATGAACTCCTTCAAGACAATCGATGGCCGCGGCGTCAGCGTCCACATCGCCGGCGGACCTTGCATTACGATTCAGTACGTGACCAACATCATAATTCACGGCGTCAACATTCACGATTGCAAGGCCGGGGGAAACGCATACGTGAGAGACTCGCCGGTTCATTACGGGTGGCGGACGAGGTCGGACGGAGATGGGGTTTCGATCTTCGGAGGAAGCCATATTTGGGTGGACCATTGCACTCTGTCAAACTGCAATGATGGTCTGATAGACGCCATTCATGGATCTACGGCCATTACCATATCCAACAATTATATGACTCACCATAACAAAGTCATGCTCTTGGGCCACAGCGATTCCTACACACCAGACAAGAACATGCAAGTGACCATAGCTTTCAACCATTTCGGAGAAGGATTAGTCCAGAGAATGCCCAGGTGTAGGCATGGGTATTTCCATGTGGTGAATAATGACTATGCGCATTGGGAGATGTACGCGCTTGGAGGTAGTGCGGCTCCGACAATCAACAGCCAAGGCAACAGATTTCTAGCGCCAAACGACGCCGACATCAAAGAGGTGACAAAGCACGAGGACGCAGCAGAGGAAGAATGGAGAAAGTGGAATTGGAGGTCAGAGGGAGATTTGATGCTAAACGGAGCGTTTTTCACGAGATCTGGAGCAGGCGCATCCTCCAGCTACGCTAAGGCGTCGAGTCTGAGCGCAAGGCCGTCGTCGCTCGTCAGTTCACTCACCGGCGGCGCCGGCGCTCTTAGTTGCAAGAAGGGTTCTCGCTGCTGA 1227 52.0 MEARLSVLLLIGLFYLLALTLVSSSPVQDPESVVQEVLTSINNATISRRNLGYLSCGTGNPIDDCWRCDPKWETNRQRLADCAIGFGKRAIGGRDGKIYVVTDPTDKDVVNPKPGTLRHAVIQDEPLWIIFSRDMVIKLKEELIMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGVNIHDCKAGGNAYVRDSPVHYGWRTRSDGDGVSIFGGSHIWVDHCTLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTPDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYAHWEMYALGGSAAPTINSQGNRFLAPNDADIKEVTKHEDAAEEEWRKWNWRSEGDLMLNGAFFTRSGAGASSSYAKASSLSARPSSLVSSLTGGAGALSCKKGSRC 408
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 46877864 46879273 + Bda006032.1 Bda02g00603 2898
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00603 408 PRINTS Pollen allergen Amb family signature 379 402 IPR018082 -
Bda02g00603 408 PRINTS Pollen allergen Amb family signature 206 227 IPR018082 -
Bda02g00603 408 PRINTS Pollen allergen Amb family signature 142 158 IPR018082 -
Bda02g00603 408 PRINTS Pollen allergen Amb family signature 308 327 IPR018082 -
Bda02g00603 408 PRINTS Pollen allergen Amb family signature 350 374 IPR018082 -
Bda02g00603 408 PRINTS Pollen allergen Amb family signature 82 99 IPR018082 -
Bda02g00603 408 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Bda02g00603 408 PRINTS Pollen allergen Amb family signature 106 131 IPR018082 -
Bda02g00603 408 Pfam Pectate lyase 146 325 IPR002022 -
Bda02g00603 408 Gene3D - 59 401 IPR012334 -
Bda02g00603 408 SUPERFAMILY Pectin lyase-like 48 402 IPR011050 -
Bda02g00603 408 PANTHER PECTATE LYASE 18-RELATED 10 405 IPR045032 GO:0030570
Bda02g00603 408 PANTHER PECTATE LYASE 10 405 - -
Bda02g00603 408 SMART amb_all 134 331 IPR002022 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00603 Bda-Chr2:46877864 Bda14g00785 Bda-Chr14:6062290 0 dispersed
Bda11g01233 Bda-Chr11:12847615 Bda02g00603 Bda-Chr2:46877864 4.42E-170 dispersed
Bda02g00603 Bda-Chr2:46877864 Bda09g01316 Bda-Chr9:44937624 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00603 K01728 - tcc:18609637 706.827