Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda02g00603 | ATGGAAGCTCGTCTCTCTGTGCTGCTACTGATCGGTCTGTTTTATCTTCTAGCTCTAACCCTCGTTTCATCTTCACCAGTTCAGGACCCTGAATCTGTTGTTCAAGAAGTTCTTACGAGCATCAACAATGCCACCATTAGCAGAAGAAACCTGGGTTATCTCTCGTGTGGTACGGGAAACCCCATTGACGACTGCTGGAGGTGCGACCCCAAGTGGGAGACTAACCGGCAGCGCCTTGCAGACTGCGCTATCGGGTTTGGCAAGCGAGCCATTGGCGGCCGTGACGGGAAAATTTACGTCGTTACAGATCCGACTGATAAAGACGTCGTGAATCCTAAACCGGGTACTCTCCGTCATGCCGTCATCCAAGACGAACCCCTTTGGATCATCTTCAGCCGGGATATGGTCATCAAGCTAAAAGAAGAGCTCATCATGAACTCCTTCAAGACAATCGATGGCCGCGGCGTCAGCGTCCACATCGCCGGCGGACCTTGCATTACGATTCAGTACGTGACCAACATCATAATTCACGGCGTCAACATTCACGATTGCAAGGCCGGGGGAAACGCATACGTGAGAGACTCGCCGGTTCATTACGGGTGGCGGACGAGGTCGGACGGAGATGGGGTTTCGATCTTCGGAGGAAGCCATATTTGGGTGGACCATTGCACTCTGTCAAACTGCAATGATGGTCTGATAGACGCCATTCATGGATCTACGGCCATTACCATATCCAACAATTATATGACTCACCATAACAAAGTCATGCTCTTGGGCCACAGCGATTCCTACACACCAGACAAGAACATGCAAGTGACCATAGCTTTCAACCATTTCGGAGAAGGATTAGTCCAGAGAATGCCCAGGTGTAGGCATGGGTATTTCCATGTGGTGAATAATGACTATGCGCATTGGGAGATGTACGCGCTTGGAGGTAGTGCGGCTCCGACAATCAACAGCCAAGGCAACAGATTTCTAGCGCCAAACGACGCCGACATCAAAGAGGTGACAAAGCACGAGGACGCAGCAGAGGAAGAATGGAGAAAGTGGAATTGGAGGTCAGAGGGAGATTTGATGCTAAACGGAGCGTTTTTCACGAGATCTGGAGCAGGCGCATCCTCCAGCTACGCTAAGGCGTCGAGTCTGAGCGCAAGGCCGTCGTCGCTCGTCAGTTCACTCACCGGCGGCGCCGGCGCTCTTAGTTGCAAGAAGGGTTCTCGCTGCTGA | 1227 | 52.0 | MEARLSVLLLIGLFYLLALTLVSSSPVQDPESVVQEVLTSINNATISRRNLGYLSCGTGNPIDDCWRCDPKWETNRQRLADCAIGFGKRAIGGRDGKIYVVTDPTDKDVVNPKPGTLRHAVIQDEPLWIIFSRDMVIKLKEELIMNSFKTIDGRGVSVHIAGGPCITIQYVTNIIIHGVNIHDCKAGGNAYVRDSPVHYGWRTRSDGDGVSIFGGSHIWVDHCTLSNCNDGLIDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTPDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYAHWEMYALGGSAAPTINSQGNRFLAPNDADIKEVTKHEDAAEEEWRKWNWRSEGDLMLNGAFFTRSGAGASSSYAKASSLSARPSSLVSSLTGGAGALSCKKGSRC | 408 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 46877864 | 46879273 | + | Bda006032.1 | Bda02g00603 | 2898 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda02g00603 | 408 | PRINTS | Pollen allergen Amb family signature | 379 | 402 | IPR018082 | - | |
| Bda02g00603 | 408 | PRINTS | Pollen allergen Amb family signature | 206 | 227 | IPR018082 | - | |
| Bda02g00603 | 408 | PRINTS | Pollen allergen Amb family signature | 142 | 158 | IPR018082 | - | |
| Bda02g00603 | 408 | PRINTS | Pollen allergen Amb family signature | 308 | 327 | IPR018082 | - | |
| Bda02g00603 | 408 | PRINTS | Pollen allergen Amb family signature | 350 | 374 | IPR018082 | - | |
| Bda02g00603 | 408 | PRINTS | Pollen allergen Amb family signature | 82 | 99 | IPR018082 | - | |
| Bda02g00603 | 408 | PRINTS | Pollen allergen Amb family signature | 286 | 305 | IPR018082 | - | |
| Bda02g00603 | 408 | PRINTS | Pollen allergen Amb family signature | 106 | 131 | IPR018082 | - | |
| Bda02g00603 | 408 | Pfam | Pectate lyase | 146 | 325 | IPR002022 | - | |
| Bda02g00603 | 408 | Gene3D | - | 59 | 401 | IPR012334 | - | |
| Bda02g00603 | 408 | SUPERFAMILY | Pectin lyase-like | 48 | 402 | IPR011050 | - | |
| Bda02g00603 | 408 | PANTHER | PECTATE LYASE 18-RELATED | 10 | 405 | IPR045032 | GO:0030570 | |
| Bda02g00603 | 408 | PANTHER | PECTATE LYASE | 10 | 405 | - | - | |
| Bda02g00603 | 408 | SMART | amb_all | 134 | 331 | IPR002022 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda02g00603 | Bda-Chr2:46877864 | Bda14g00785 | Bda-Chr14:6062290 | 0 | dispersed | |
| Bda11g01233 | Bda-Chr11:12847615 | Bda02g00603 | Bda-Chr2:46877864 | 4.42E-170 | dispersed | |
| Bda02g00603 | Bda-Chr2:46877864 | Bda09g01316 | Bda-Chr9:44937624 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda02g00603 | K01728 | - | tcc:18609637 | 706.827 |