Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00638 ATGACATGTACTACCTGTGCTGAATCTGTTGAATGTGCCCTTCTAATGTTTGAGGGAGTGAAAAAAGCAGCAGTTGGTTTAGCTTTGGAAGAAGCAAGGGTGCATTTTGATTCTAACCTCATCAATGCTGAGCAAGTTGCTCAGGCAGTAGAAGATGCTGGCTTTGGAGCTGAGATAATAAATTCTGGAAATGATGTTAACTTAGCTCATCTAAAACTTCAAGGAATTAGTTCTCCAGCAGATATGACCGCTATAAAATCTTTGCTTGAAATAGCTGTTGGTGTAGATCGTGTTGACATGGACTTGAAAGGACAAACGGTTGCCATCAGCTATGACCCAGAGCTCACCGGCCCAAGGTCACTCATACAGTGCATAAGGGAATCAGGCCAACCACACACTTTTGATGCAAACTTGTATGCTCCTCCAAGACGAAGAGATACAGAGCAACTTCAGGAAATTCAGACTTACAGAAACCAATTCCTGCTCAGCTGCCTGTTTTCTGCTCCTGTAATTTTATTTTCCATGGTACTTCCCAAGCTTCCCCCTTATGGAAATTGGTTAGGGTACAAGATTCACAACATGTTTACTGTTGGAATGCTTCTTAGATGGATTCTTTGTACACCTGTTCAGTTTATTATTGGCCGAAGATTTTATGTGGGATCATACTATGCATTGAGGCGAAAATCTGCTAATATGGAAGTTCTAGTGGCATTAGGCACTAATGCTGCTTACTTTTATTCTGTATACATAGTAATGAAATCAATGGCCTCAGATGGGTTTGAAGGACAAGATTTCTTTGAAACTAGTTCCATGCTAATATCCTTTATTCTCCTGGGGAAATACTTGGAGGTAGTGGCTAGAGGAAAAACCTCCGATGCTTTAGCTAAGCTTGCGGATCTTTCTCCCGATGTAGCTCATCTGTTAAAGTTAGACGATGATGGGAACGTTATCTTAGAGATGGAAATCGACACTCAATTGATACAGAGGAATGACATTATAAAGATTGTTCCAGGAGAAAAAGTTCCAGTTGACGGGATTGTTATGAATGGTCATAGTCATGTTAACGAGAGTATGATCACAGGAGAGGCTAGACCAACTTTTAAAAAAGTTGGTGACAAGGTTATTGGCGGTACTGTTAATGAAAATGGATGCTTATTGGTTAGAGCCACCCATGTGGGGTCTGATACTGCACTATCACAAATTGTTCAACTTGTTGAGGATGCGCAACTTGCTAGAGCACCTGTTCAGAAATTAGCTGACCAGATATCAAAATTTTTTGTTCCTGCTGTTGTTCTCGCAGCATTTCTCACATGGCTTGCGTGGTTTGTTTCTGGAGAAATGCATATATATCCTAGCCAATGGATACCAAAGGACATGGATGGATTTGAGCTTGCGTTGCAGTTTGGCATTTCTGTACTAGTGGTTGCCTGCCCATGCGCTCTTGGTCTAGCAACACCAACAGCAGTCATGGTTGCCTCAGGGAAAGGTGCTTCTCAAGGGGTGCTTATCAAAGGTGGAAACGCCTTGGAAAAAGCACACAAGGTGAAAACTATTGTCTTTGATAAGACTGGAACACTAACAGTTGGCCGGCCGGTGGTAGTTAGTGCTGTGCTCTTCTCCCGTTTTTCAATGGAGGAATTCTGTGATATGACTGTAGCTACAGAGGTGAGTAGCTCTGCAAATAGCGAACATCCATTAGCAAAAGCTGTGGTAGAACATGCAAAGAAGCTGAGGCAGAGATTTGGGTGCCAAAATGAATGCCTAACAGAGGTGAAGGACTTTGAGGTGCACCCAGGAGCAGGTGTTGGTGGAAAGGTTGGAGACAGATCAGTTTTTGTTGGAAACAAAAGACTCATGCATGCTTGTAATATTCCAATCGTTCTCGAAGTAGAGGAATATATTTCAGAACATGAGCAGCTTGCTCGAACATGTGTACTAGTTGCCATTGATGGAAAGATTGCTGGTGCTTTTGCTGTTACTGATCCTGTAAAGCCTGAGGCTGGGATTGTTATATCCTTTCTTCGTTCGAAGGGTATCTCAAGCATCATGGTCACTGGTGACAACTGGTCTACAGCAACTGCGATTGCAAAGGAGGTGGGCATTGACAAAGTCTTTGCCGAGACTGATCCAATTGGGAAAGCTGACAAGATTAAAGATTTGCAGATGCAAGGGATCATAGTGGCAATGGTAGGGGATGGAATCAATGACTCACCTGCCTTAGTTGCAGCGGATGTTGGTATGGCAATTGGGGCCGGAACAGATATTGCAATAGAAGCAGCTGACATAGTTCTCATAAAGAGCAATTTGGAAGATGTTGTTACAGCTGTAGATCTTTCAAGAAAGACCATGTCTCGTATTTGGCTTAACTACATTTGGGCCCTCGGCTATAATATTCTTGGTATGCCAATTGCTGCTGGAATCTTATACCCCTTCACTGGAATAAGGTTGCCACCATGGTTAGCTGGTGCTTGCATGGCTGCTTCATCCCTAACTGTTGTTTGTTCTTCTCTATTGTTGCAATCATACAAGAAGCCTCTGCATATTGAATCTACCTGA 2556 42.76 MTCTTCAESVECALLMFEGVKKAAVGLALEEARVHFDSNLINAEQVAQAVEDAGFGAEIINSGNDVNLAHLKLQGISSPADMTAIKSLLEIAVGVDRVDMDLKGQTVAISYDPELTGPRSLIQCIRESGQPHTFDANLYAPPRRRDTEQLQEIQTYRNQFLLSCLFSAPVILFSMVLPKLPPYGNWLGYKIHNMFTVGMLLRWILCTPVQFIIGRRFYVGSYYALRRKSANMEVLVALGTNAAYFYSVYIVMKSMASDGFEGQDFFETSSMLISFILLGKYLEVVARGKTSDALAKLADLSPDVAHLLKLDDDGNVILEMEIDTQLIQRNDIIKIVPGEKVPVDGIVMNGHSHVNESMITGEARPTFKKVGDKVIGGTVNENGCLLVRATHVGSDTALSQIVQLVEDAQLARAPVQKLADQISKFFVPAVVLAAFLTWLAWFVSGEMHIYPSQWIPKDMDGFELALQFGISVLVVACPCALGLATPTAVMVASGKGASQGVLIKGGNALEKAHKVKTIVFDKTGTLTVGRPVVVSAVLFSRFSMEEFCDMTVATEVSSSANSEHPLAKAVVEHAKKLRQRFGCQNECLTEVKDFEVHPGAGVGGKVGDRSVFVGNKRLMHACNIPIVLEVEEYISEHEQLARTCVLVAIDGKIAGAFAVTDPVKPEAGIVISFLRSKGISSIMVTGDNWSTATAIAKEVGIDKVFAETDPIGKADKIKDLQMQGIIVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLIKSNLEDVVTAVDLSRKTMSRIWLNYIWALGYNILGMPIAAGILYPFTGIRLPPWLAGACMAASSLTVVCSSLLLQSYKKPLHIEST 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47308779 47314883 - Bda006068.1 Bda02g00638 2933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00638 851 SUPERFAMILY Calcium ATPase, transduction domain A 320 405 IPR008250 -
Bda02g00638 851 Gene3D - 530 663 IPR023299 GO:0000166
Bda02g00638 851 ProSitePatterns E1-E2 ATPases phosphorylation site. 521 527 IPR018303 -
Bda02g00638 851 Gene3D - 1 62 - -
Bda02g00638 851 Gene3D - 67 139 - -
Bda02g00638 851 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 848 - -
Bda02g00638 851 SFLD C1.7: P-type atpase like 501 782 - -
Bda02g00638 851 SUPERFAMILY HMA, heavy metal-associated domain 64 132 IPR036163 GO:0046872
Bda02g00638 851 Pfam Heavy-metal-associated domain 1 55 IPR006121 GO:0046872
Bda02g00638 851 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 232 839 IPR027256 GO:0006812|GO:0016021|GO:0019829
Bda02g00638 851 CDD HMA 1 58 IPR006121 GO:0046872
Bda02g00638 851 Pfam E1-E2 ATPase 319 498 - -
Bda02g00638 851 SUPERFAMILY HAD-like 517 836 IPR036412 -
Bda02g00638 851 PRINTS P-type cation-transporting ATPase superfamily signature 355 369 - -
Bda02g00638 851 PRINTS P-type cation-transporting ATPase superfamily signature 655 666 - -
Bda02g00638 851 PRINTS P-type cation-transporting ATPase superfamily signature 677 687 - -
Bda02g00638 851 PRINTS P-type cation-transporting ATPase superfamily signature 730 749 - -
Bda02g00638 851 PRINTS P-type cation-transporting ATPase superfamily signature 519 533 - -
Bda02g00638 851 PRINTS P-type cation-transporting ATPase superfamily signature 753 765 - -
Bda02g00638 851 SFLD p-type atpase 501 782 IPR044492 -
Bda02g00638 851 SUPERFAMILY HMA, heavy metal-associated domain 1 63 IPR036163 GO:0046872
Bda02g00638 851 Pfam haloacid dehalogenase-like hydrolase 515 744 - -
Bda02g00638 851 Gene3D - 287 409 - -
Bda02g00638 851 SUPERFAMILY Calcium ATPase, transmembrane domain M 267 511 IPR023298 -
Bda02g00638 851 Gene3D - 510 780 IPR023214 -
Bda02g00638 851 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 272 807 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda02g00638 851 PANTHER ATP7, ISOFORM B 1 848 - -
Bda02g00638 851 CDD P-type_ATPase_Cu-like 160 840 - -
Bda02g00638 851 PRINTS Copper-transporting ATPase 1 signature 48 68 - -
Bda02g00638 851 PRINTS Copper-transporting ATPase 1 signature 160 181 - -
Bda02g00638 851 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Bda02g00638 851 PRINTS Copper-transporting ATPase 1 signature 195 215 - -
Bda02g00638 851 PRINTS Copper-transporting ATPase 1 signature 215 240 - -
Bda02g00638 851 ProSiteProfiles Heavy-metal-associated domain profile. 1 59 IPR006121 GO:0046872
Bda02g00638 851 ProSiteProfiles Heavy-metal-associated domain profile. 68 134 IPR006121 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00013 Bda-Chr2:857422 Bda02g00638 Bda-Chr2:47308779 2.21E-92 dispersed
Bda02g00638 Bda-Chr2:47308779 Bda02g00644 Bda-Chr2:47405113 0 dispersed
Bda02g00638 Bda-Chr2:47308779 Bda02g00643 Bda-Chr2:47391153 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00638 K17686 - csin:114270619 1340.1