Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00643 ATGACATGTACTACCTGTGCTGAATCTGTTGAATGTGCCCTTCTAATGTTTGAGGGAGTGAAAAAAGCAGCAGTTGGTTTAGCTTTGGAAGAAGCAAGGGTGCATTTTGATTCTAACCTCATCAATGCTGAGCAAGTTGCTCAGGCAGTAGAAGATGCTGGCTTTGGAGCTGAGATAATAAATTCTGGAAATGATGTTAACTTAGCTCATCTAAAACTTCAAGGAATTAGTTCTCCAGCAGATATGACCGCTATAAAATCTTTGCTTGAAATAGCTGTTGGTGTAGATTGTGTTGACATGGACTTGAAAGGACAAACGGTTGCCATCAGCTATGACCCAGACCTCACCGGTCCAAGGTCACTCATACAGTGCATAAGGGAATCAGGCCAACCACACACTTTTGATGCAAACTTGTATGCTCCTCCAAGACGAAGAGATACAGAGCAACTTCAGGAAATTCAGACTTACAGAAACCAATTCCTGCTCAGCTGCCTGTTTTCTGCTCCTGTAATTTTATTTTCCATGGTACTTCCCAAGCTTCCCCCTTATGGAAATTGGTTAGGGTACAAGATTCACAACATGTTTACTGTTGGGATGCTTCTTAGATGGATTCTTTGTACACCTGTTCAGTTTATTATTGGCCGAAGATTTTATGTGGGATCATACTATGCATTGAGGCGAAAATCTGCCAATATGGAAGTTCTAGTGGCATTAGGCACTAATGCTGCTTACTTTTATTCTGTATACATAGTAATAAAATCAATGGCCTCAGATGGGTTTGAAGGACAAGATTTCTTTGAAACTAGTTCCATGCTAATATCCTTTATTCTCTTGGGGAAATACTTGGAGGTAGTGGCTAGAGGAAAAACCTCCGATGCTTTAGCTAAGCTTGCGGATCTTTCTCCCGATGTAGCTCATCTGTTAAAGTTAGACGATGATGGGAACGTTATCTTAGAGATGGAAATCGACACTCAATTGATACAGAGGAATGACATTATCAAGATTGTTCCAGGAGAAAAAGTTCCAGTTGACGGGATTGTTATGAATGGTCATAGTCATGTTAACGAGAGTATGATCACAGGAGAGGCTAGACCAACTTTTAAAAAAGTTGGTGACAAGGTTATTGGCGGTACTGTTAATGAAAATGGATGCTTATTGGTTAGAGCCACCCATGTGGGGTCTGATACTGCACTATCGCAAATTGTTCAACTTGTTGAGGATGCGCAACTTGCTAGAGCTCCTGTTCAAAAATTAGCTGACCAGATATCAAAATTTTTTGTTCCTGCTGTTGTTCTCGCAGCATTTCTAACATGGCTTGCGTGGTTTGTTTCTGGAGAAACGCATATATATCCTAGCCAATGGATACCAAAGGACATGGATGGATTTGAGCTTGCATTGCAGTTTGGCATTTCTGTACTAGTGGTTGCCTGCCCATGCGCTCTTGGTCTAGCAACACCAACAGCAGTCATGGTTGCCTCAGGGAAAGGTGCTTCTCAAGGGGTGCTTATCAAAGGTGGAAACGCCTTGGAAAAAGCACACAAGGTGAAAACTATTGTCTTTGATAAGACTGGAACACTAACAGTTGGCCGGCCGGTGGTAGTTAGTGCTGTGCTCTTCTCCCGTTTTTCAATGGAGGAATTCTGTGATATGACTGTAGCTACAGAGGCAAATAGCGAACATCCATTAGCAAAAGCTGTGGTAGAACATGCAAAGAAGCTGAGGCAGAGATTTGGGTGCCAAAATGAATGCCTGACAGAGGTGAAGGACTTTGAGGTGCACCCAGGAGCAGGTGTTGGTGGAAAGGTTGGAGACAGATCAGTTTTTGTGGGAAACAAAAGACTCATGCATGCTTGTAATATTCCAATCGTTCTCGAAGTAGAGGAATATATTTCAGAACATGAGCAGCTTGCTCGAACATGTGTACTAGTTGCCATTGATGGAAAGATTGCTGGTGCTTTTGCTGTTACTGATCCTGTAAAGCCTGAGGCTGGGATTGTTATATCCTTTCTTCGTTCGAAGGGTATCTCAAGCATCATGGTCACTGGTGACAACTGGTCTACAGCAACAGCGATTGCAAAGGAGGTGGGCATTGACAAAGTCTTTGCCGAGACTGATCCAATTGGAAAAGCGGACAAGATTAAAGATTTGCAGATGCAAGGGATCATAGTGGCAATGGTAGGGGATGGAATCAATGACTCACCTGCCTTAGTTGCAGCGGATGTTGGTATGGCAATTGGGGCCGGAACAGATATTGCAATAGAAGCAGCTGACATAGTTCTCATAAAGAGCAATTTGGAAGATGTTGTTACAGCTGTAGATCTTTCAAGAAAGACCATGTCTCGTATTTGGCTTAACTACATTTGGGCCCTCGGCTATAATATTCTTGGTATGCCAATTGCTGCTGGAATCTTATACCCCTTCACTGGAATAAGGTTGCCACCATGGTTAGCTGGTGCTTGCATGGCTGCTTCATCCCTAACTGTTGTTTGTTCTTCTCTATTGTTGCAATCATACAAGAAGCCTCTGCATATTGAATCTACCTGA 2544 42.73 MTCTTCAESVECALLMFEGVKKAAVGLALEEARVHFDSNLINAEQVAQAVEDAGFGAEIINSGNDVNLAHLKLQGISSPADMTAIKSLLEIAVGVDCVDMDLKGQTVAISYDPDLTGPRSLIQCIRESGQPHTFDANLYAPPRRRDTEQLQEIQTYRNQFLLSCLFSAPVILFSMVLPKLPPYGNWLGYKIHNMFTVGMLLRWILCTPVQFIIGRRFYVGSYYALRRKSANMEVLVALGTNAAYFYSVYIVIKSMASDGFEGQDFFETSSMLISFILLGKYLEVVARGKTSDALAKLADLSPDVAHLLKLDDDGNVILEMEIDTQLIQRNDIIKIVPGEKVPVDGIVMNGHSHVNESMITGEARPTFKKVGDKVIGGTVNENGCLLVRATHVGSDTALSQIVQLVEDAQLARAPVQKLADQISKFFVPAVVLAAFLTWLAWFVSGETHIYPSQWIPKDMDGFELALQFGISVLVVACPCALGLATPTAVMVASGKGASQGVLIKGGNALEKAHKVKTIVFDKTGTLTVGRPVVVSAVLFSRFSMEEFCDMTVATEANSEHPLAKAVVEHAKKLRQRFGCQNECLTEVKDFEVHPGAGVGGKVGDRSVFVGNKRLMHACNIPIVLEVEEYISEHEQLARTCVLVAIDGKIAGAFAVTDPVKPEAGIVISFLRSKGISSIMVTGDNWSTATAIAKEVGIDKVFAETDPIGKADKIKDLQMQGIIVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLIKSNLEDVVTAVDLSRKTMSRIWLNYIWALGYNILGMPIAAGILYPFTGIRLPPWLAGACMAASSLTVVCSSLLLQSYKKPLHIEST 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47391153 47397501 - Bda006074.1 Bda02g00643 2938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00643 847 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 232 835 IPR027256 GO:0006812|GO:0016021|GO:0019829
Bda02g00643 847 ProSitePatterns E1-E2 ATPases phosphorylation site. 521 527 IPR018303 -
Bda02g00643 847 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Bda02g00643 847 PRINTS P-type cation-transporting ATPase superfamily signature 355 369 - -
Bda02g00643 847 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Bda02g00643 847 PRINTS P-type cation-transporting ATPase superfamily signature 519 533 - -
Bda02g00643 847 PRINTS P-type cation-transporting ATPase superfamily signature 749 761 - -
Bda02g00643 847 PRINTS P-type cation-transporting ATPase superfamily signature 726 745 - -
Bda02g00643 847 Gene3D - 530 659 IPR023299 GO:0000166
Bda02g00643 847 PANTHER ATP7, ISOFORM B 1 844 - -
Bda02g00643 847 SFLD Haloacid Dehalogenase 501 778 - -
Bda02g00643 847 SUPERFAMILY Calcium ATPase, transmembrane domain M 264 511 IPR023298 -
Bda02g00643 847 SFLD p-type atpase 501 778 IPR044492 -
Bda02g00643 847 PRINTS Copper-transporting ATPase 1 signature 48 68 - -
Bda02g00643 847 PRINTS Copper-transporting ATPase 1 signature 160 181 - -
Bda02g00643 847 PRINTS Copper-transporting ATPase 1 signature 19 42 - -
Bda02g00643 847 PRINTS Copper-transporting ATPase 1 signature 195 215 - -
Bda02g00643 847 PRINTS Copper-transporting ATPase 1 signature 215 240 - -
Bda02g00643 847 ProSiteProfiles Heavy-metal-associated domain profile. 68 134 IPR006121 GO:0046872
Bda02g00643 847 CDD HMA 1 58 IPR006121 GO:0046872
Bda02g00643 847 SUPERFAMILY HAD-like 517 832 IPR036412 -
Bda02g00643 847 Pfam haloacid dehalogenase-like hydrolase 515 740 - -
Bda02g00643 847 SUPERFAMILY HMA, heavy metal-associated domain 1 63 IPR036163 GO:0046872
Bda02g00643 847 Pfam E1-E2 ATPase 319 498 - -
Bda02g00643 847 Gene3D - 287 409 - -
Bda02g00643 847 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 1 844 - -
Bda02g00643 847 Gene3D - 510 776 IPR023214 -
Bda02g00643 847 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 272 803 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda02g00643 847 Pfam Heavy-metal-associated domain 1 55 IPR006121 GO:0046872
Bda02g00643 847 CDD P-type_ATPase_Cu-like 160 836 - -
Bda02g00643 847 SUPERFAMILY Calcium ATPase, transduction domain A 320 405 IPR008250 -
Bda02g00643 847 Gene3D - 1 62 - -
Bda02g00643 847 ProSiteProfiles Heavy-metal-associated domain profile. 1 59 IPR006121 GO:0046872
Bda02g00643 847 SUPERFAMILY HMA, heavy metal-associated domain 64 132 IPR036163 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00643 Bda-Chr2:47391153 Bda09g00041 Bda-Chr9:615048 2.70E-14 dispersed
Bda02g00638 Bda-Chr2:47308779 Bda02g00643 Bda-Chr2:47391153 0 proximal
Bda02g00643 Bda-Chr2:47391153 Bda02g00644 Bda-Chr2:47405113 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00643 K17686 - csin:114270619 1347.8