Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00670 ATGCTTGGCGGAATGATGGATCCGGAGCTAATGAGATTGGCTCAGGAACAGATGAGTCGTATGTCCCCGGCAGACTTCGCTAGGATCCAGGAACAGATGATGGCTAATCCTGATTTAATGAGGATGGCCTCGGAAAGTATGAAAAACATGAGGCCAGAAGACTTGAGAAACGCTGCAGAGCAGTTAAAGCGTACCCGTCCAGAGGAGATGGCTGAGATTGGTGAGAAGATGGCTAAGGCAACACCTGAAGAGATTGCAACTATGCGTGCTCGTGTTGATGGCCAAATCAATTACGAATTGAACGCAGCTGAGATGCTGAAGAAACAGGGAAATGATCTTCATAGCCAGTGTCGGTACAGCGACGCCTCACAGAAATATTTGCTTGCAAAGAAAAACCTCAACGGAGTTTCATCTTCTAAAGGAAAAGCACTCCTTATGGCATGTTCACTCAACCTGATGTCATGTTACTTGAAAACTATGCAGTATCATAAATGCATTGAGGAAGGTTCTGAGGTTTTGACGCATGATACAAATAATATAAAAGCTCTTTACCGGAGAGGCCAAGCTTATAAAGAAATGGGTCGATTTCGGGATGCCGTTAAGGATTTGAGCAAGGCACACGATCTTTCCCCTGAAGACGAAACTATTTGTGATGTTCTGAGCTGCGATGCCTTAATGTGTGATTATCAAACTTTAACTACCGATCTTGGTCTAATAGGAGTAATTATTGAAGAAATAAATGAAGAAGATGAAGCTATGTCCTCTGTGAATAATAAAAGCTCCTCACCAGAGGACTCAGGGTCAAAAGCACCGGAAATAAACCAGTCTTCAAGGAGTCAGAGTACATTTCCTAATGGGGGTCTCACCAATACAGAATATTTGCAATCTATGAAAGATGATCCGGAAGCTATCAGATCATTCCAAACTTTCATTTCAAAAGCAGATCCTGACTCTTTAGCTGCTATGAATTTTGGAAAGGCGGGAGAGATATCTCCTGACATGGTTAAAACTGCCTCACAAATGATTGGAAAGATGTCGCCTCAAGACCTTCAAAAAATGCTTGAAGTAGCTTCTTCGTTCCAGGGTGAGAATCCATATTCTATGGGCGGCTCCACTTCCACGTTCCCAAATTTTGGGAGTCCCAACATGACACCTGACATGCTTAAAACAGCAAATGATATGATGAGTAATATGTCACCTGATGACCTTCAGAAGATGTTTGAAATGGCAGCATCTTTGAAAGGGAAGGATACAATTCCATCAACATCTTCCAGCAGTGGACGAAATTCAGATACTGGTATCAGTTTTTCTGATTCCCAGGCAAATAATGAAACTAGTGGTTCAGATAAACTTAGTTCTTCCCGTTCAAGAAATGCTTCTGCTCTACCAAGCTTCCCAACCTCAACAGGTGATCTCCAAGAACAGATGAGAAATCAAATGAAAGATCCAGCAATGCAAAAGATGTTTTCATCAATGATAAAAAATATGAGTCCAGAGATGATGGCAAATATGAGCGAACAATTTGGTTTTAAGCTTTCTCAGGAGGATGCAGTGAAAGCGCAGCAAGCCATGTCATCTTTATCTACAGAGGACTTAGACAGAATGATGCGGTGGGCAGATAGGATTCAAAGATGCGTGGAAGGTGCGAAGAAGTCGAAGAATTGGCTGCTCGGAAGGCAAGGAATGATTTTAGCTATATGCATGCTCATTTTAGCTGTAATCCTTCACCGGCTTGGATTTATAGGTAGCTAG 1752 42.24 MLGGMMDPELMRLAQEQMSRMSPADFARIQEQMMANPDLMRMASESMKNMRPEDLRNAAEQLKRTRPEEMAEIGEKMAKATPEEIATMRARVDGQINYELNAAEMLKKQGNDLHSQCRYSDASQKYLLAKKNLNGVSSSKGKALLMACSLNLMSCYLKTMQYHKCIEEGSEVLTHDTNNIKALYRRGQAYKEMGRFRDAVKDLSKAHDLSPEDETICDVLSCDALMCDYQTLTTDLGLIGVIIEEINEEDEAMSSVNNKSSSPEDSGSKAPEINQSSRSQSTFPNGGLTNTEYLQSMKDDPEAIRSFQTFISKADPDSLAAMNFGKAGEISPDMVKTASQMIGKMSPQDLQKMLEVASSFQGENPYSMGGSTSTFPNFGSPNMTPDMLKTANDMMSNMSPDDLQKMFEMAASLKGKDTIPSTSSSSGRNSDTGISFSDSQANNETSGSDKLSSSRSRNASALPSFPTSTGDLQEQMRNQMKDPAMQKMFSSMIKNMSPEMMANMSEQFGFKLSQEDAVKAQQAMSSLSTEDLDRMMRWADRIQRCVEGAKKSKNWLLGRQGMILAICMLILAVILHRLGFIGS 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47682640 47686806 + Bda006103.1 Bda02g00670 2965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00670 583 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 59 583 - -
Bda02g00670 583 MobiDBLite consensus disorder prediction 251 293 - -
Bda02g00670 583 Pfam Tetratricopeptide repeat 181 213 IPR001440 GO:0005515
Bda02g00670 583 MobiDBLite consensus disorder prediction 415 472 - -
Bda02g00670 583 Gene3D Tetratricopeptide repeat domain 94 229 IPR011990 GO:0005515
Bda02g00670 583 PANTHER OUTER ENVELOPE PROTEIN 61 59 583 - -
Bda02g00670 583 SMART tpr_5 146 179 IPR019734 GO:0005515
Bda02g00670 583 SMART tpr_5 180 213 IPR019734 GO:0005515
Bda02g00670 583 SMART tpr_5 103 136 IPR019734 GO:0005515
Bda02g00670 583 ProSiteProfiles TPR repeat region circular profile. 180 213 - -
Bda02g00670 583 MobiDBLite consensus disorder prediction 253 293 - -
Bda02g00670 583 MobiDBLite consensus disorder prediction 416 472 - -
Bda02g00670 583 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Bda02g00670 583 SUPERFAMILY TPR-like 97 217 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00670 - - - qsu:112009327 740.339
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda02g00670 Bda09g00346 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00670 Bda-Chr2:47682640 Bda10g00518 Bda-Chr10:38814020 1.38E-11 dispersed
Bda02g00670 Bda-Chr2:47682640 Bda06g00290 Bda-Chr6:4866548 1.12E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g21 Blo03g01017 Blo03g01402 Bda02g00670 . . . . Bma07g01363 Cmo10g00837 Cmo11g00780 Cma10g00808 . . . . . Cpe18g00272 Bhi02g01724 . . . . . . . . . . . . . . . Cone18ag0011 Cone11ag1582 Lsi06g00388 . . . . . . Bda09g00346 . . . . . . . Cma11g00772 . . . . Cpe04g00988 . . . . . . . Cla03g01404 . . . . . . . Csa01g03041 Chy02g01319 Cme02g00352
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009099 1 1 0 1 1 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda02g00670 Bda_Chr02 FPKM 1.562667 1.695383 0.0 0.0 1.813847 1.274504 1.194102 0.0 0.0