Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00672 ATGTCTTTGGAGTTGATGGCCTCCGAACGTATATGTTATGTTTACTGCAACTTCTGCAACACTGTATTAGCGGTAAGCGTTCCATGCAGTAGCTTGTTCAACATCGTGACAGTAAGATGTGGGCACTGCACCAATTTGCTGTCTGTGAATGTGGGAGCTTCCCTATTTCCTGCTCAAGACTCGCAGCAGCTAAGTCCTGGGGGTTCCAGCACAGACAGTGGTGGTTCTTCATCCAAATCTACTAAACTAGGTGCTTTTGAGTCTGTAGATCATGAACCATCTAGAATGCCTCCAGTTCGCCCTCCAGAGAAAAGACAGCGCCTTCCTTCTGCTTATAACAGGTTCATTAAAGAGGAGATCCAAAGGATTAAAGCTAGTAATCCAGACATAACCCACAGAGAAGCTTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATTCATTTTGGGTTGAAGATAACGGAGGGAAACAAGCAAGCAAAGTTGGATAATTCATTTGCAGGAGAAGGGATCAATAAGAAGGCAAAGACTAACGGATTCTTCTAA 552 43.84 MSLELMASERICYVYCNFCNTVLAVSVPCSSLFNIVTVRCGHCTNLLSVNVGASLFPAQDSQQLSPGGSSTDSGGSSSKSTKLGAFESVDHEPSRMPPVRPPEKRQRLPSAYNRFIKEEIQRIKASNPDITHREAFSTAAKNWAHFPHIHFGLKITEGNKQAKLDNSFAGEGINKKAKTNGFF 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47697065 47701742 + Bda006105.1 Bda02g00672 2967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00672 183 MobiDBLite consensus disorder prediction 60 108 - -
Bda02g00672 183 PANTHER PROTEIN YABBY 6-RELATED 6 175 IPR006780 GO:0007275
Bda02g00672 183 SUPERFAMILY HMG-box 97 146 IPR036910 -
Bda02g00672 183 Gene3D High mobility group box domain 92 149 IPR036910 -
Bda02g00672 183 MobiDBLite consensus disorder prediction 60 84 - -
Bda02g00672 183 MobiDBLite consensus disorder prediction 85 102 - -
Bda02g00672 183 Pfam YABBY protein 7 153 IPR006780 GO:0007275
Bda02g00672 183 PANTHER AXIAL REGULATOR YABBY 2-RELATED 6 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01948 Bda-Chr1:55878994 Bda02g00672 Bda-Chr2:47697065 4.49E-57 dispersed
Bda02g00672 Bda-Chr2:47697065 Bda08g00564 Bda-Chr8:5726069 5.49E-58 dispersed
Bda02g00672 Bda-Chr2:47697065 Bda09g01385 Bda-Chr9:45711455 6.44E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15570 PF04690 YABBY 6.40E-68 CL0114 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00672 K25796 - zju:107410267 267.314