Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00683 ACTTCCTCTGCAGATTTCTCCATGTCTGAGTCTCCGACTCCGAACTCATCGGAGGATAAGCCTGAGCAGATCGCGCCCCCTCTGAAGCGCCAGCTTCCTTGTTCTTCTATGAAGCCGCCATTTGCAGCTTTGGAGGACTATCACCGCTTTTCCCCTGACTCTCGCCGAATCGCTGATCATTATTCTGAGGGTATTGTTGTTAAATCTCCGCAATTAAAGAGAAAAAGTGGCATGCCGGACTTCAAAGCTGAGTCTAGTGAGGGGGCAATTGTTCCTCGATTCACTGAAGTATCCAACAGCACTCTTCAAACACCTGGATCCATAAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACAAAGTGCAGTAGATCAGTACCTCAAACTCCTGTTCCAAATGTAGTGACAGGTTCACCTTCTGGCAACAATCTCACACCGGCAGGTCCATGCCGATATGACAGTTCCCTAGGTCTCTTGACGAAAAAGTTTATCAACTTGATCAAACAAGCAGAAGATGGTATCCTTGACCTCAATAAAGCTGCAGACACATTAGAGGTGCAAAAAAGGAGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTGATAGACAAGAAGCTGAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAAGCCAGGGGACGATGATGAAAATTTTACTAGTTTACAAGCAGAAATCGAAAAACTTTCCATTGAGGAGCGTGGATTAGATGAACAAATAAGACAAATGCAGGAAAGATTACAGGGCCTCAGTGAAACTGAGAACAATCAAAGGTGGCTTTTTGTCACCGAGGAAGATATCAAAGGTTTGCCTTGCTTTCAGAATGAAACGTTAATAGCTATCAAGGCTCCACATGGGACTATGTTAGAAGTACCCGATCCTGATGAGAGTGATGCCGATTACTGGCTTCTATCGGGCGCGGATGTTAGCATTACTGACATATGGAGAACTGAAACTGGTGTTGAATGGGATGATTTGGGTACCCTCCATGAAGATTATCCTATGACCAGCATTGATGAGATAGCCAATGTTGAATTGCCTCTTCCGCAGTCACCAGCACCATCAGTTGCAGATGAATTGCCTTCTGATTCTAAACCTTCTGGAAGTTGA 1137 44.33 TSSADFSMSESPTPNSSEDKPEQIAPPLKRQLPCSSMKPPFAALEDYHRFSPDSRRIADHYSEGIVVKSPQLKRKSGMPDFKAESSEGAIVPRFTEVSNSTLQTPGSIKGGKGSKSRLTKCSRSVPQTPVPNVVTGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIDKKLKNRIQWKGLDVSKPGDDDENFTSLQAEIEKLSIEERGLDEQIRQMQERLQGLSETENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTMLEVPDPDESDADYWLLSGADVSITDIWRTETGVEWDDLGTLHEDYPMTSIDEIANVELPLPQSPAPSVADELPSDSKPSGS 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47790281 47794882 + Bda006116.1 Bda02g00683 2978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00683 378 MobiDBLite consensus disorder prediction 1 40 - -
Bda02g00683 378 PANTHER TRANSCRIPTION FACTOR E2F 307 367 IPR015633 GO:0000978|GO:0006357
Bda02g00683 378 SMART E2F_TDP_2 150 215 IPR003316 GO:0005667|GO:0006355
Bda02g00683 378 MobiDBLite consensus disorder prediction 1 20 - -
Bda02g00683 378 Coils Coil 166 186 - -
Bda02g00683 378 Gene3D - 224 321 - -
Bda02g00683 378 Gene3D - 144 217 IPR036388 -
Bda02g00683 378 CDD E2F_DD 230 313 IPR032198 GO:0046983
Bda02g00683 378 SUPERFAMILY E2F-DP heterodimerization region 227 307 IPR037241 -
Bda02g00683 378 Pfam E2F/DP family winged-helix DNA-binding domain 152 215 IPR003316 GO:0005667|GO:0006355
Bda02g00683 378 Coils Coil 235 262 - -
Bda02g00683 378 SUPERFAMILY Winged helix DNA-binding domain 150 213 IPR036390 -
Bda02g00683 378 MobiDBLite consensus disorder prediction 117 145 - -
Bda02g00683 378 PANTHER TRANSCRIPTION FACTOR E2FB 26 307 - -
Bda02g00683 378 PANTHER TRANSCRIPTION FACTOR E2FB 307 367 - -
Bda02g00683 378 Pfam E2F transcription factor CC-MB domain 231 312 IPR032198 GO:0046983
Bda02g00683 378 PANTHER TRANSCRIPTION FACTOR E2F 26 307 IPR015633 GO:0000978|GO:0006357
Bda02g00683 378 MobiDBLite consensus disorder prediction 100 145 - -
Bda02g00683 378 MobiDBLite consensus disorder prediction 355 378 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00683 Bda09g01394 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00442 Bda-Chr1:31407369 Bda02g00683 Bda-Chr2:47790281 1.82E-40 dispersed
Bda02g00683 Bda-Chr2:47790281 Bda03g00671 Bda-Chr3:5691855 8.13E-13 dispersed
Bda01g00346 Bda-Chr1:29132992 Bda02g00683 Bda-Chr2:47790281 2.22E-43 wgd
Bda01g00346 Bda-Chr1:29132992 Bda02g00683 Bda-Chr2:47790281 2.22E-43 wgd
Bda02g00683 Bda-Chr2:47790281 Bda09g01394 Bda-Chr9:45834440 1.08E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15571 PF16421 E2F_CC-MB 8.70E-25 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00683 K06620 - csv:101219318 456.062