Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00683 ACTTCCTCTGCAGATTTCTCCATGTCTGAGTCTCCGACTCCGAACTCATCGGAGGATAAGCCTGAGCAGATCGCGCCCCCTCTGAAGCGCCAGCTTCCTTGTTCTTCTATGAAGCCGCCATTTGCAGCTTTGGAGGACTATCACCGCTTTTCCCCTGACTCTCGCCGAATCGCTGATCATTATTCTGAGGGTATTGTTGTTAAATCTCCGCAATTAAAGAGAAAAAGTGGCATGCCGGACTTCAAAGCTGAGTCTAGTGAGGGGGCAATTGTTCCTCGATTCACTGAAGTATCCAACAGCACTCTTCAAACACCTGGATCCATAAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACAAAGTGCAGTAGATCAGTACCTCAAACTCCTGTTCCAAATGTAGTGACAGGTTCACCTTCTGGCAACAATCTCACACCGGCAGGTCCATGCCGATATGACAGTTCCCTAGGTCTCTTGACGAAAAAGTTTATCAACTTGATCAAACAAGCAGAAGATGGTATCCTTGACCTCAATAAAGCTGCAGACACATTAGAGGTGCAAAAAAGGAGAATATATGATATAACAAATGTCCTTGAAGGAATTGGTCTGATAGACAAGAAGCTGAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAAGCCAGGGGACGATGATGAAAATTTTACTAGTTTACAAGCAGAAATCGAAAAACTTTCCATTGAGGAGCGTGGATTAGATGAACAAATAAGACAAATGCAGGAAAGATTACAGGGCCTCAGTGAAACTGAGAACAATCAAAGGTGGCTTTTTGTCACCGAGGAAGATATCAAAGGTTTGCCTTGCTTTCAGAATGAAACGTTAATAGCTATCAAGGCTCCACATGGGACTATGTTAGAAGTACCCGATCCTGATGAGAGTGATGCCGATTACTGGCTTCTATCGGGCGCGGATGTTAGCATTACTGACATATGGAGAACTGAAACTGGTGTTGAATGGGATGATTTGGGTACCCTCCATGAAGATTATCCTATGACCAGCATTGATGAGATAGCCAATGTTGAATTGCCTCTTCCGCAGTCACCAGCACCATCAGTTGCAGATGAATTGCCTTCTGATTCTAAACCTTCTGGAAGTTGA 1137 44.33 TSSADFSMSESPTPNSSEDKPEQIAPPLKRQLPCSSMKPPFAALEDYHRFSPDSRRIADHYSEGIVVKSPQLKRKSGMPDFKAESSEGAIVPRFTEVSNSTLQTPGSIKGGKGSKSRLTKCSRSVPQTPVPNVVTGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIDKKLKNRIQWKGLDVSKPGDDDENFTSLQAEIEKLSIEERGLDEQIRQMQERLQGLSETENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTMLEVPDPDESDADYWLLSGADVSITDIWRTETGVEWDDLGTLHEDYPMTSIDEIANVELPLPQSPAPSVADELPSDSKPSGS 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 47790281 47794882 + Bda006116.1 Bda02g00683 2978

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00683 378 MobiDBLite consensus disorder prediction 1 40 - -
Bda02g00683 378 PANTHER TRANSCRIPTION FACTOR E2F 307 367 IPR015633 GO:0000978|GO:0006357
Bda02g00683 378 SMART E2F_TDP_2 150 215 IPR003316 GO:0005667|GO:0006355
Bda02g00683 378 MobiDBLite consensus disorder prediction 1 20 - -
Bda02g00683 378 Coils Coil 166 186 - -
Bda02g00683 378 Gene3D - 224 321 - -
Bda02g00683 378 Gene3D - 144 217 IPR036388 -
Bda02g00683 378 CDD E2F_DD 230 313 IPR032198 GO:0046983
Bda02g00683 378 SUPERFAMILY E2F-DP heterodimerization region 227 307 IPR037241 -
Bda02g00683 378 Pfam E2F/DP family winged-helix DNA-binding domain 152 215 IPR003316 GO:0005667|GO:0006355
Bda02g00683 378 Coils Coil 235 262 - -
Bda02g00683 378 SUPERFAMILY Winged helix DNA-binding domain 150 213 IPR036390 -
Bda02g00683 378 MobiDBLite consensus disorder prediction 117 145 - -
Bda02g00683 378 PANTHER TRANSCRIPTION FACTOR E2FB 26 307 - -
Bda02g00683 378 PANTHER TRANSCRIPTION FACTOR E2FB 307 367 - -
Bda02g00683 378 Pfam E2F transcription factor CC-MB domain 231 312 IPR032198 GO:0046983
Bda02g00683 378 PANTHER TRANSCRIPTION FACTOR E2F 26 307 IPR015633 GO:0000978|GO:0006357
Bda02g00683 378 MobiDBLite consensus disorder prediction 100 145 - -
Bda02g00683 378 MobiDBLite consensus disorder prediction 355 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00683 K06620 E2F3; transcription factor E2F3 - csv:101219318 456.062
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda02g00683 Bda09g01394 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00442 Bda-Chr1:31407369 Bda02g00683 Bda-Chr2:47790281 1.82E-40 dispersed
Bda02g00683 Bda-Chr2:47790281 Bda03g00671 Bda-Chr3:5691855 8.13E-13 dispersed
Bda01g00346 Bda-Chr1:29132992 Bda02g00683 Bda-Chr2:47790281 2.22E-43 wgd
Bda01g00346 Bda-Chr1:29132992 Bda02g00683 Bda-Chr2:47790281 2.22E-43 wgd
Bda02g00683 Bda-Chr2:47790281 Bda09g01394 Bda-Chr9:45834440 1.08E-35 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00825 . 3 372 E2F-DP Transcription Factor Family AT3G48160 53.2 3.2e-93 339.0
Bda05g00254 . 80 283 E2F-DP Transcription Factor Family AT5G02470 54.6 2.2e-59 226.1
Bda03g00671 . 14 467 E2F-DP Transcription Factor Family AT2G36010 52.2 4.1e-119 425.2
Bda09g01394 BCT 2 381 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-109 392.5
Bda09g01394 BCT 25 409 E2F-DP Transcription Factor Family AT5G22220 58.6 1.8e-103 373.2
Bda03g00671 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.5 1.2e-86 317.4
Bda02g00683 BCT 17 306 E2F-DP Transcription Factor Family AT5G22220 61.7 1.4e-79 293.9
Bda02g00683 BCT 149 305 E2F-DP Transcription Factor Family AT1G47870 60.5 3.8e-46 182.6
Bda05g00254 . 80 283 E2F-DP Transcription Factor Family AT5G02470 54.6 2.2e-59 226.1
Bda09g01394 BCT 25 409 E2F-DP Transcription Factor Family AT5G22220 58.6 1.8e-103 373.2
Bda03g00671 . 29 433 E2F-DP Transcription Factor Family AT5G22220 50.5 1.2e-86 317.4
Bda02g00683 BCT 17 306 E2F-DP Transcription Factor Family AT5G22220 61.7 1.4e-79 293.9
Bda03g00671 . 14 467 E2F-DP Transcription Factor Family AT2G36010 52.2 4.1e-119 425.2
Bda09g01394 BCT 2 381 E2F-DP Transcription Factor Family AT2G36010 56.9 3.0e-109 392.5
Bda02g00683 BCT 149 305 E2F-DP Transcription Factor Family AT1G47870 60.5 3.8e-46 182.6
Bda14g00825 . 3 372 E2F-DP Transcription Factor Family AT3G48160 53.2 3.2e-93 339.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15571 PF16421 E2F_CC-MB 8.70E-25 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda02g00683 Bda_Chr02 FPKM 11.489501 9.471647 36.241852 39.647633 2.785926 3.725321 3.918692 29.83951 28.376217