Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00754 ATGGCTGGAAGAGCTACTCCGACTACAACTACGTACTCTCCTTCTCCCACAACCCAAAAGACTAGGCATTCCTTCTACAATCAAAGTAACTCAACGCCGAATTTTGTAGTTTTCAAGACTGGCGCTGTAAATGCTGCATCAGGATCTGCTTATGCAGAGTTTGGAAATACCAAAGTCATTGTATCTGTATTTGGTCCAAGAGAAAGTAAGAAAGCAATGATGTACAGCGACATAGGTCGGCTTAATTGCAGTGTCAGCTATACAACATTTGCTACCCCTGTTCGAGGGCAGGGATCAGAACACAAAGAATTCTCCTCAATGCTTCATAAGTCTCTGGAGGGTGTAATAATACTGGAAACTTTCCCTAAGACAACCGTTGATGTATTTGCATTGGTTTTGGAGTCTGGTGGGAGTGATCTACCAGTGATTATATCATGCGCTAGTCTTGCCCTAGCCGATGCGGGGATTATGGTTTATGACCTTGTTCCCTCAGTATCCGTGTCTTGTTTTGGTAAGAATCTCGTTATTGATCCAATCTCGGAAGAAGAAAACTGCCAAGATGGAAGTCTAATGATAACTCTCATGCCATCTCGGTACGAGGTCACTCAACTCACAGTGACGGGGGAATGGTCGGCGCCTAAAATTGATGAGGCAATGCAGCTCTGCCTGGATGCTTGCTCAAAGCTTGCAACGATCATGAGAGTGCGTCTGAGAGAAGCTGTCGATCTCCATCGGAATAGAAAGTATATGCAGTCGCCATCTGGTTCAGAATTTTGTAGCTTCATCATGGGTTATCAAAATTCAAAACCTATAAGGTTTAGTTTCTTAATCTCAGTCATAATTGTGTTTAATTTGATCATTTCCATCTTTGAATTTGAAATGTTTCCTTCAGATTTCAAGAAGACTTCCAATTTTCAGGCCAGCTTAAACAGGAACATAGATGGCCTTCAATTGCCAGAGTCAATCGCCAAGAAAGCTAGAAAATCCTTGAAGGCTAAGGTTTTATCGAGAGTATTCTCTGAAGACTATGAACTAGTGAGGCGAAAAATATTGGACCCTCGAGGCCGAAATTTACGCAGATGGAACAAGATTTTCTTAGTGGCTTGTTTGGTTTCTCTGTTTGTAGACCCTTTATTCTTCTACTTGCCAGTTGTGTGGGATAAAATGTGCATTGAGATTGCAGTTAGTCTCGAAGTCGTTCTCACGGCGATAAGATCCATTGCCGATATCTTCTACATAATCCAGATTTTGATTAAGTTTCGAACGGCTTTTATCGCTCCTTATTCTCGTGTATTTGGGAGGGGAGAGCTCGTAATAGACCCTTCGAAAATCGCCTCGAGATATTTAGTTCATGGTTTCTGGATTGATCTTATGGCTGCTCTGCCTCTTCCTCAGGTTTTAGGAGCTTGTTGGTATCTATTATCGATCGAGCGAGAAGAAACGTATCTTCAATCTACAACAGTCCGATTAGAAGAGTGGAGGATAAAGAGAAGAGATACTGAACAATGGATGCATCACAGACAGCTTCCCCCGGAGCTGAGACAGTCGGTGAGAAAATATGATCAGTATAAATGGGTTGCGACTCGAGGAGTAGATGAAGAAGCTCTGCTTAAAGGCCTTCCGATGGATCTCCGACGAGACATTAAACGCCATCTCTGCCTCGACCTTGTTCGCAGAGTTCCTTTGTTCGATCAAATGGACGAGAGAACTCTGGATGCAATCTGCGAGAGGCTGAAGCCGGCGTTGACGTTTTTGGTTCGAGAAGGCGACCCAGTTAATGCAATGCTGTTTATAATCAGAGGAAACCTTGATTCCTACACCACTAATGGCGGACGAACTGGGTTTTTCAATTCATGCAGAATAGGCCCAGGGGATTTCTGCGGCGAAGAGTTGCTCACGTGGGCGCTGGACCCTCGGCCAGGCGTTGCCCTCCCTAGCTCCACTCGCACTGTGGAAGCCATCTCAGAATTCCGATTCTACTCGCATCAATGGCGGACGTGGGCGGCTTGTTTTGTGCAGGCCGCTTGGAGGCGTTACAAGAAACGCAAGGAAGCGGCGGAGCTGAGGGCTAGAGAGAGTCAACCGGAGGTGTACTCGCCTGAATTGCAGATTCCTGCTTCAGCCATTAGAAACGGCGGGAAGAACAGACCTGGGTCTGCGATTGTGACGTCGTTGCAGAAGCCGGAAGAACCAGATTTCTCTGTGGTCGATGAATGA 2217 45.47 MAGRATPTTTTYSPSPTTQKTRHSFYNQSNSTPNFVVFKTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQGSEHKEFSSMLHKSLEGVIILETFPKTTVDVFALVLESGGSDLPVIISCASLALADAGIMVYDLVPSVSVSCFGKNLVIDPISEEENCQDGSLMITLMPSRYEVTQLTVTGEWSAPKIDEAMQLCLDACSKLATIMRVRLREAVDLHRNRKYMQSPSGSEFCSFIMGYQNSKPIRFSFLISVIIVFNLIISIFEFEMFPSDFKKTSNFQASLNRNIDGLQLPESIAKKARKSLKAKVLSRVFSEDYELVRRKILDPRGRNLRRWNKIFLVACLVSLFVDPLFFYLPVVWDKMCIEIAVSLEVVLTAIRSIADIFYIIQILIKFRTAFIAPYSRVFGRGELVIDPSKIASRYLVHGFWIDLMAALPLPQVLGACWYLLSIEREETYLQSTTVRLEEWRIKRRDTEQWMHHRQLPPELRQSVRKYDQYKWVATRGVDEEALLKGLPMDLRRDIKRHLCLDLVRRVPLFDQMDERTLDAICERLKPALTFLVREGDPVNAMLFIIRGNLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPGVALPSSTRTVEAISEFRFYSHQWRTWAACFVQAAWRRYKKRKEAAELRARESQPEVYSPELQIPASAIRNGGKNRPGSAIVTSLQKPEEPDFSVVDE 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48285764 48292146 + Bda006192.1 Bda02g00754 3049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00754 738 Gene3D Jelly Rolls 560 671 IPR014710 -
Bda02g00754 738 SUPERFAMILY Ribosomal protein S5 domain 2-like 36 156 IPR020568 -
Bda02g00754 738 MobiDBLite consensus disorder prediction 707 738 - -
Bda02g00754 738 Pfam 3' exoribonuclease family, domain 1 38 156 IPR001247 -
Bda02g00754 738 CDD RNase_PH_MTR3 39 239 - -
Bda02g00754 738 Pfam 3' exoribonuclease family, domain 2 161 221 IPR015847 -
Bda02g00754 738 ProSiteProfiles IQ motif profile. 665 694 IPR000048 GO:0005515
Bda02g00754 738 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 467 656 - -
Bda02g00754 738 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 320 467 - -
Bda02g00754 738 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 656 737 - -
Bda02g00754 738 ProSiteProfiles cAMP/cGMP binding motif profile. 554 659 IPR000595 -
Bda02g00754 738 PANTHER - 467 656 - -
Bda02g00754 738 MobiDBLite consensus disorder prediction 1 24 - -
Bda02g00754 738 CDD CAP_ED 562 656 IPR000595 -
Bda02g00754 738 SUPERFAMILY cAMP-binding domain-like 492 632 IPR018490 -
Bda02g00754 738 SUPERFAMILY Ribonuclease PH domain 2-like 159 240 IPR036345 -
Bda02g00754 738 SMART cnmp_10 562 686 IPR000595 -
Bda02g00754 738 Gene3D Helix hairpin bin 489 553 - -
Bda02g00754 738 Pfam Ion transport protein 360 469 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bda02g00754 738 Gene3D - 36 246 IPR027408 -
Bda02g00754 738 SUPERFAMILY Voltage-gated potassium channels 352 469 - -
Bda02g00754 738 PANTHER - 656 737 - -
Bda02g00754 738 PANTHER - 320 467 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00754 Bda-Chr2:48285764 Bda12g00522 Bda-Chr12:7998729 3.49E-36 dispersed
Bda07g01104 Bda-Chr7:12926171 Bda02g00754 Bda-Chr2:48285764 4.56E-24 dispersed
Bda13g00772 Bda-Chr13:9245920 Bda02g00754 Bda-Chr2:48285764 5.34E-06 dispersed
Bda02g00754 Bda-Chr2:48285764 Bda15g00779 Bda-Chr15:11637413 1.44E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00754 K05391 - cit:102621236 431.409