Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00757 ATGAAGGAGGCGGCCGAGAAGAGCTTGGATCCTAAGCTATGGCACGCCTGCGCCGGCGGGATGGTTCAGATGCCACCAGTGAACTCAAAAGTCTTCTACTTCCCTCAAGGTCATGCCGAACATGCTCAAGCCGCCGTCGATTTCGGTTCAGCCCCGAGAATTCCGCCGCTTATTGCTTGCAGAGTCGCCGGAGTGAAGTTCTTAGCCGACCCTGAAAGTGACGAGGTTTTCGCCAAGGTGAAACTGGTTCCTCTAGGAACGAACGAGCTTGATTCTGACGACGAGGGTGGATATGGAGTTAATGGGGCTGAGATTGCAGAAAAGCCTGCTTCTTTTGCGAAGACATTGACTCAATCTGACGCCAACAATGGCGGTGGCTTCTCCGTTCCAAGATACTGTGCGGAGACGATATTTCCACGTCTGGATTACTCTGCTGATCCTCCTGTTCAGACAGTAATCGCTAAAGACGTCCACGGAGAAATTTGGAAATTTCGGCATATTTACAGAGGAACCCCTCGACGCCATTTGTTGACCACCGGATGGAGCACTTTCGTCAACCAGAAGAAGCTCGTCGCTGGTGATTCAATCGTCTTTCTGAGAGACGACAGAGGAGAGCTTTGCGTTGGGATCCGGCGAGCCAGCCGGACTATTGGCTATGCTCTTGATTGCTCTCCGGGTTGGGGTATTGGCTCGGGAAATTGCGCGCCTCCTTATGGGGGATTCTCTATGTTCCTAAAAGGGGACGAAAGCAAATTTATCCGAAACGGGTATTCAAATTCAAGTTCTGGCGGTAATCTGACCGGAAGAGGAAGGGTGTTGCCGGAGTCGGTAATGGAAGGGGTGGCTCTTGCCAGCAGTGGGCGGCCATTTGAGATAGTTTACTACCCTCGAGCCAGCACACCTGAGTTCTGCGTTAGGTACGCATCTGTGAGGGCTACCATGAGAATTCAGTGGTGCTCCGGCATGAGGTTCAAAATGGCATTCGAAACAGAAGATTCCTCTCGGATTAGCTGGTTCATGGGTACCATTTCTGCCGTTCAAGTTGCCGATCCTCTCCACTGGCCTAACTCGCCATGGCGGCTTCTCCAGGTCACTTGGGACGAACCCGACCTGCTACAAAATGTGAAGCGTGTCAATCCGTGGTTGGTTGAGTTAGTTCCAAACTCACCCGTAATCCACCTCTCGCCTTTCTCGCCTCCAAGAAAGAAATTAAGGATACCATCCTTCTCGGAGCCTCCCCTCGATGGCCAATTTGCTGTGCCATCCTTTCTCAACAATCCTGTTGGGCCGAGTTTTGGTGATATCACTACTCCTGCAGGCATACAGGGAGCCAGGCATTCTCGATTTGGACTATCTTTATCGAATCTCCACACTAACGACAAACTGCAATTGGGGCTGTTTCCTTCCAATCTTCTCCCCCTCGATCTATACTCACGAGTTTCCAATACCAATATAAAAAACGAGGCCAAGACGAAAGAAAAAAGCCTTTCGAGCTTTCTGACGATGGGAAATTCTTGCGAGAAATCGGACAAATCTGAAAATGTGAAGAGGCACCAGTTCATACTCTTTGGTCAGCCAATCGTGACGGAGCAGCAAATATCGATTGATTCATCGGCACAGAAAGAAAAACCTCTTCTTCCTAATGGTTCTGAACTTGGAGTGGATATCGGCCAGTGCAAGGTATTCATGGAGTCTGAAGATGTGGGTCTGACCCTCGATCTTTCTGCTTTCAGCTCTTTCGACGAGCTCTATAAACAACTTGCCATCATTTTCGGAGTTGAAACATCGGACGGAAGCAAGAACGTGCTTTACCAAGATTTAGCCGGTGCTGTTAAACACATCGGCGACGAACCCTTCAGTGATTTTAAAAGAAGAGCAAGGAGGCTAGAAATTCTGAAAAACTCGGCAAACGGCGATACTAAAAGGAAGTGGATTGCAAGAATGCGAAACACGGGTGGTGTACTCGAAGCATCGAATAAGCGAGGACCCTTGAGCATATTTGCCTAA 2007 49.43 MKEAAEKSLDPKLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQAAVDFGSAPRIPPLIACRVAGVKFLADPESDEVFAKVKLVPLGTNELDSDDEGGYGVNGAEIAEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRDDRGELCVGIRRASRTIGYALDCSPGWGIGSGNCAPPYGGFSMFLKGDESKFIRNGYSNSSSGGNLTGRGRVLPESVMEGVALASSGRPFEIVYYPRASTPEFCVRYASVRATMRIQWCSGMRFKMAFETEDSSRISWFMGTISAVQVADPLHWPNSPWRLLQVTWDEPDLLQNVKRVNPWLVELVPNSPVIHLSPFSPPRKKLRIPSFSEPPLDGQFAVPSFLNNPVGPSFGDITTPAGIQGARHSRFGLSLSNLHTNDKLQLGLFPSNLLPLDLYSRVSNTNIKNEAKTKEKSLSSFLTMGNSCEKSDKSENVKRHQFILFGQPIVTEQQISIDSSAQKEKPLLPNGSELGVDIGQCKVFMESEDVGLTLDLSAFSSFDELYKQLAIIFGVETSDGSKNVLYQDLAGAVKHIGDEPFSDFKRRARRLEILKNSANGDTKRKWIARMRNTGGVLEASNKRGPLSIFA 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48348964 48351401 + Bda006195.1 Bda02g00757 3052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00757 668 Gene3D - 318 390 - -
Bda02g00757 668 SUPERFAMILY DNA-binding pseudobarrel domain 109 216 IPR015300 -
Bda02g00757 668 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Bda02g00757 668 SMART B3_2 112 214 IPR003340 GO:0003677
Bda02g00757 668 PANTHER AUXIN RESPONSE FACTOR 5 538 - -
Bda02g00757 668 PANTHER AUXIN RESPONSE FACTOR 552 645 - -
Bda02g00757 668 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Bda02g00757 668 Gene3D - 556 638 - -
Bda02g00757 668 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 552 645 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bda02g00757 668 CDD B3_DNA 111 212 IPR003340 GO:0003677
Bda02g00757 668 Pfam Auxin response factor 282 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bda02g00757 668 Gene3D - 110 213 IPR015300 -
Bda02g00757 668 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 538 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bda02g00757 668 ProSiteProfiles PB1 domain profile. 556 639 IPR000270 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01395 Bda-Chr1:49876568 Bda02g00757 Bda-Chr2:48348964 3.42E-131 dispersed
Bda02g00757 Bda-Chr2:48348964 Bda02g00770 Bda-Chr2:48437939 4.97E-78 dispersed
Bda13g01518 Bda-Chr13:38231325 Bda02g00757 Bda-Chr2:48348964 8.53E-39 dispersed
Bda01g00294 Bda-Chr1:27818086 Bda02g00757 Bda-Chr2:48348964 2.27E-135 wgd
Bda14g00072 Bda-Chr14:567865 Bda02g00757 Bda-Chr2:48348964 3.42E-174 wgd
Bda02g00757 Bda-Chr2:48348964 Bda03g00741 Bda-Chr3:6302195 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15580 PF02362 B3 6.00E-22 CL0405 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00757 - - qsu:111995036 899.427