Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00775 ATGGGTAAAGAAAAAGTACACATTAACATTGTGGTCATTGGTCATGTCGATTCTGGCAAGTCGACTACCACGGGTCACTTGATCTACAAGCTTGGAGGAATCGACAAGCGTGTGATTGAGAGGTTCGAGAAAGAGGCTGCTGAGATGAACAAAAGGTCATTCAAGTATGCTTGGGTGTTGGACAAGCTCAAGGCTGAGCGGGAGCGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACTGTCATCGATGCTCCTGGACATCGGGATTTTATCAAGAACATGATTACAGGCACCTCCCAAGCTGACTGTGCTGTGCTTATTATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATTTCCAAGGATGGTCAGACCCGTGAGCATGCTTTGCTTGCTTTCACTCTTGGTGTGAAGCAGATGATCTGCTGCTGCAACAAGATGGATGCCACTACACCCAAGTACTCGAAGGGAAGGTATGATGAAATAGTGAAGGAAGTCTCATCTTATCTCAAAAAGGTTGGTTACAACCCGGAAAAGATCCCTTTTGTACCCATCTCTGGTTTTGAGGGAGACAACATGATTGAGAGGTCGACCAACCTCGACTGGTACAAGGGTCCTACCCTCCTGGACGCCCTTGACCTGATCTTGGAGCCGAAGAGGCCTTCAGACAAGCCTCTGCGTCTCCCTCTTCAGGATGTATACAAGATCGGTGGTATTGGAACTGTGCCCGTTGGACGTGTTGAGACTGGTGTTGTGAAGCCTGGAATGGTGGTGACTTTTGGCCCCACTGGACTGACAACTGAAGTTAAGTCTGTGGAGATGCACCATGAGGCTCTCCAGGAAGCTCTTCCAGGTGATAATGTGGGTTTCAACGTGAAGAACGTTGCTGTGAAGGATCTGAAGCGTGGTTTTGTTGCTTCCAACTCCAAGGATGATCCTGCCAGGGAAGCTGCCAACTTCACCTCTCAGGTGATCATCATGAACCATCCAGGCCAGATCGGCAACGGCTATGCACCAGTTCTTGATTGCCACACCTCCCACTATTGCTGTGAAATTTGCCGAGATCTTGACCAAGATCGACAGACGATCTGGAAAGGAGCTTGA 1128 48.85 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDLILEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVVKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHYCCEICRDLDQDRQTIWKGA 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48461320 48462560 + Bda006212.1 Bda02g00775 3070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00775 375 Pfam Elongation factor Tu C-terminal domain 322 361 IPR004160 -
Bda02g00775 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Bda02g00775 375 TIGRFAM EF-1_alpha: translation elongation factor EF-1, subunit alpha 1 362 IPR004539 GO:0003746|GO:0005525|GO:0006414
Bda02g00775 375 SUPERFAMILY Translation proteins 231 360 IPR009000 -
Bda02g00775 375 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Bda02g00775 375 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Bda02g00775 375 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Bda02g00775 375 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Bda02g00775 375 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Bda02g00775 375 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Bda02g00775 375 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Bda02g00775 375 CDD EF1_alpha_II 230 320 - -
Bda02g00775 375 Pfam Elongation factor Tu GTP binding domain 6 224 IPR000795 GO:0003924|GO:0005525
Bda02g00775 375 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 360 - -
Bda02g00775 375 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Bda02g00775 375 Gene3D Translation factors 229 316 - -
Bda02g00775 375 CDD EF1_alpha 9 227 - -
Bda02g00775 375 Gene3D Translation factors 323 370 - -
Bda02g00775 375 PANTHER TRANSLATION FACTOR 1 360 - -
Bda02g00775 375 Gene3D - 1 227 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00775 Bda-Chr2:48461320 Bda15g00380 Bda-Chr15:6732927 0 dispersed
Bda02g00774 Bda-Chr2:48458204 Bda02g00775 Bda-Chr2:48461320 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00775 K03231 - dct:110098189 715.687