Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00787 ATGTTGGATCTTAATCGCAATGTCATCACGACCGATCCGACTCAGAATAACGAATCTATTTTGCCGATTGAGAAGCTCCCTCAGGGTTCGGTGAACCAAAGGGATGAATCAGAAACCTCCAATTCCTTGATTGTCAATGCGGAGGCCTCGAGCAATGGATATGATGAAGATTCGTGCTCTACACGCGCCGTTGATGCGGTGGTTACATTTAACTTCGACATTTTGAAGACTGGGAAAGGGAACGATATCGTCACGAAGGAGTTATTTCCAACAACTGGAGCTTCTTCTGGAGTCAAGGGGAATTTTGGGAATTGGCAGGGGCAGAACTCGGCTTCTTCTTCATCTTCTTCTTCTAGGAAGAATTGGATCGACCTAGCGTTTGATCAGGGAGGCTCCGGAACTGACTTGAGAGTGGTTAAGCCACAACCAGTGAAAAAGAGCAGGAGGGGACCGAGATCTCGGAGCTCGCAGTATCGAGGTGTCACGTTCTACCGGAGAACTGGGCGATGGGAATCCCATATATGGGACTGTGGGAAGCAAGTCTATTTAGGTGGATTTGACACTGCGCATGCTGCTGCAAGAGCATATGATCGAGCTGCAATAAAGTTCAGAGGCGTTGATGCAGACATCAATTTTGTTCTCAGTGATTACGAGGAAGAATTGAAGCAGATGAAGAATCTTAGCAAGGAAGAATTTGTTCACATACTTCGGCGACAGAGCACAGGTTTTTCAAGGGGAAGCTCAAAATATCGAGGTGTAACGCTGCACAAGTGTGGCCGATGGGAAGCTAGAATGGGACAGTTCCTTGGCAAAAAGTATATATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCCTATGACAAGGCGGCTATCAAATGTAATGGAAGAGAGGCAGTCACTAATTTTGAGCCTAGCACTTACGAGGAGGAGATGATTTCAGAGGGCAGTAACGAAGGTTGTGAAAAATTGCTTGATCTGAATCTAGGAATATCACCTCCCTCAACTGATAATGGTCCTAAGGAAAATAAAGGGCGACTTCAGTTTAACACTGGCCCCTATTACGTACGCAATGGAAGGAGTTCAAGGATAGAACGCCATGCTAATGCAATGGTTGGTGATCCTCCTATGGCCTATGAAAGGCCTGGTAATGGCATTGGAGAACCCGGCCTTATGGAACAGTGTGCATCCGAATAA 1203 46.47 MLDLNRNVITTDPTQNNESILPIEKLPQGSVNQRDESETSNSLIVNAEASSNGYDEDSCSTRAVDAVVTFNFDILKTGKGNDIVTKELFPTTGASSGVKGNFGNWQGQNSASSSSSSSRKNWIDLAFDQGGSGTDLRVVKPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFVLSDYEEELKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEEEMISEGSNEGCEKLLDLNLGISPPSTDNGPKENKGRLQFNTGPYYVRNGRSSRIERHANAMVGDPPMAYERPGNGIGEPGLMEQCASE 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48582555 48584889 + Bda006227.2 Bda02g00787 3082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00787 400 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 370 - -
Bda02g00787 400 Coils Coil 210 230 - -
Bda02g00787 400 SMART rav1_2 157 219 IPR001471 GO:0003700|GO:0006355
Bda02g00787 400 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Bda02g00787 400 SUPERFAMILY DNA-binding domain 248 307 IPR016177 GO:0003677
Bda02g00787 400 CDD AP2 157 212 IPR001471 GO:0003700|GO:0006355
Bda02g00787 400 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700|GO:0006355
Bda02g00787 400 SUPERFAMILY DNA-binding domain 156 213 IPR016177 GO:0003677
Bda02g00787 400 Gene3D AP2/ERF domain 248 307 IPR036955 GO:0003700|GO:0006355
Bda02g00787 400 Gene3D AP2/ERF domain 156 214 IPR036955 GO:0003700|GO:0006355
Bda02g00787 400 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Bda02g00787 400 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 370 - -
Bda02g00787 400 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Bda02g00787 400 PRINTS Ethylene responsive element binding protein signature 288 308 IPR001471 GO:0003700|GO:0006355
Bda02g00787 400 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
Bda02g00787 400 MobiDBLite consensus disorder prediction 136 158 - -
Bda02g00787 400 Pfam AP2 domain 248 298 IPR001471 GO:0003700|GO:0006355
Bda02g00787 400 Pfam AP2 domain 157 205 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00787 Bda-Chr2:48582555 Bda14g01250 Bda-Chr14:13001301 8.07E-102 dispersed
Bda14g00335 Bda-Chr14:2389991 Bda02g00787 Bda-Chr2:48582555 1.18E-12 wgd
Bda15g00186 Bda-Chr15:4427851 Bda02g00787 Bda-Chr2:48582555 5.79E-12 wgd
Bda02g00787 Bda-Chr2:48582555 Bda03g00754 Bda-Chr3:6358952 2.58E-12 wgd
Bda02g00787 Bda-Chr2:48582555 Bda09g01480 Bda-Chr9:46582710 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15583 PF00847 AP2 2.20E-09 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00787 K09284 - csv:101222024 534.258