Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00818 ATGGAGGGAGATAAAGGCGCCCTCTTGCAGAGTCTGATCAATATAGTCAACGAAATAGCTTCTTTCTCCGATTACGCGTATTCCGTGAAGAAACAGTTTTGCAATTTAGTGAGGAGATTGAAGCTCTTGATTCCGATGTTGGAGGAGATTAGAGACGGAAAAGAGACGCCCCCTGAAGAGACGGTGAAAGCTCTTCTCGCGTTGAAGGAAGCTATGGAGTCAGCTAGGGAGTTGCTCAGATTTGGCAGCGAGGGGAGCAAGATTTATCTGGTTATGGAGAGAGATGAAATTATGAACAAATTCGCCGAAGTGACCGGACGGTTGGAGGGAGCTTTGAGTGAAACTTGCTTTGAGAAACTCGACATTTCGGATGAAATTAAGGAACAGGTCGAGCTTGTTCTTGGTCAGTTTAGACGAGCAGTAGCTCGAGTTGATCTACCCGATATTGAGCTTTATCACGATATACTACACCTTTACAATAAAAACAGTGATTCGACTACAGATCGAGATATTGTCAGACGGGTAGCCGAAAAACTGCAATTATTGGGAATAGCTGATCTTACTCAAGAGTCATTAGCTCTGCACGAGCTGGTGGCTGCTAGCAGTGGAGATCCAGGGGAGAGAATTGAGAAGATGTCAATGCTACTGAAGAAAATAAAGGATCTTGTTCAAACCGAAAATCTCGATACTTTCCCGAATGAGAAGATTCTAGGCCCTAGTTGTAGTGGACAAGTATCTCCCATCAAAAATCGAAACCTTCCTGTTGTTCCAGATGACTTTCGCTGTCCTATATCCCTCGATTTGATGAAGGATCCTGTCATTGTGTCTACCGGTCAGACCTATGATCGATCCTGCATCAAGAAGTGGTTGGATGCAGGGCATGGGACGTGCCCAAAGACACAGCAGGTCCTTACGAGAACCACTCTTACACCAAATTATGTGTTGCGAAGTCTCATCGAGCAATGGTGCGAAACGCATGGCATTGACCCGCCAAAACGGCCGACCAAAACTGCTTCGTCTCTTCATGAGGGCAGTAACATTGAAATTCTCATCTCCAAACTATCGATAGGAAACCTTGACGAACAGAGATCGGCGGCTTGTGAGATCCGACTTCTTGCCAAGCGCAATGCCGATAATCGTGTGGCCATTGCTGAAGCAGGTGCAATTCCTCCTCTTGTCAGCCTCCTTTCAGATTTTGATTCCCGCACGCAGGAACATGCTGTGACGGCCCTACTTAACTTGTCGATATGCGAAGATAACAAGAGACGAATCATGGCTTGTTCGGCGATTCCGGGTATCGTTCATGTTTTGAAGAAAGGAAGTATGGAGGCTCGAGAAAATGCGGCAGCCACTCTTTTCAGCCTTTCTGTTCGAGATCAAAACAAGATAATAATTGGTTCATTAGGAGCAATCCCTCCACTGGCGACACTTTTGAGCGAAGGTACACAGAGGGGAAAGAAAGATGCAGCCACAGCACTTTTCAATCTGTGCATTTACCAAGGGAACAAGGGTAAGGCAGTAAGAGCCGGAGTTGTTCCGACTCTTATGCGGCTTCTGACGGAACCCGGAGGAGGAATGTTGGATGAGGCTCTGGCTGTTTTAGCAATACTAGCCAGTCATCCTGAAGGGAAAGCTGCCATTGGAGCTGCGCGGGCAGTGCCGGTTCTGGTACAGGTTATCGGAAATGGATCCTCGAGAAACAGAGAGAATGCCGCTGCTGTTTTGGTGCATCTTATCGCCGGAGATCACTGTCATTTGGTGGAAGCTAAAGAGCTTGGAGTGATGGATTCGCTAATAGATATGGCACAAAATGGAACTGATAGAGGCAAACGAAAAGCTGCCCAGTTGCTCGAGCGCATGACTCGATTTGTCGAGGATCAGACACAAGCTGAGGCTCAGGGAGAGACTCAATCTCATGCCCAAACACCCTCTCCTCCGCTCACTGCCGATAGTTGA 1956 47.29 MEGDKGALLQSLINIVNEIASFSDYAYSVKKQFCNLVRRLKLLIPMLEEIRDGKETPPEETVKALLALKEAMESARELLRFGSEGSKIYLVMERDEIMNKFAEVTGRLEGALSETCFEKLDISDEIKEQVELVLGQFRRAVARVDLPDIELYHDILHLYNKNSDSTTDRDIVRRVAEKLQLLGIADLTQESLALHELVAASSGDPGERIEKMSMLLKKIKDLVQTENLDTFPNEKILGPSCSGQVSPIKNRNLPVVPDDFRCPISLDLMKDPVIVSTGQTYDRSCIKKWLDAGHGTCPKTQQVLTRTTLTPNYVLRSLIEQWCETHGIDPPKRPTKTASSLHEGSNIEILISKLSIGNLDEQRSAACEIRLLAKRNADNRVAIAEAGAIPPLVSLLSDFDSRTQEHAVTALLNLSICEDNKRRIMACSAIPGIVHVLKKGSMEARENAAATLFSLSVRDQNKIIIGSLGAIPPLATLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMLDEALAVLAILASHPEGKAAIGAARAVPVLVQVIGNGSSRNRENAAAVLVHLIAGDHCHLVEAKELGVMDSLIDMAQNGTDRGKRKAAQLLERMTRFVEDQTQAEAQGETQSHAQTPSPPLTADS 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48770320 48772965 - Bda006259.1 Bda02g00818 3113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00818 651 Gene3D - 7 118 IPR036537 GO:0007166
Bda02g00818 651 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 635 - -
Bda02g00818 651 MobiDBLite consensus disorder prediction 623 651 - -
Bda02g00818 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 329 IPR013083 -
Bda02g00818 651 SUPERFAMILY RING/U-box 254 331 - -
Bda02g00818 651 MobiDBLite consensus disorder prediction 626 651 - -
Bda02g00818 651 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515
Bda02g00818 651 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515
Bda02g00818 651 Gene3D - 338 523 IPR011989 -
Bda02g00818 651 SMART arm_5 540 580 IPR000225 GO:0005515
Bda02g00818 651 SMART arm_5 417 457 IPR000225 GO:0005515
Bda02g00818 651 SMART arm_5 499 539 IPR000225 GO:0005515
Bda02g00818 651 SMART arm_5 581 622 IPR000225 GO:0005515
Bda02g00818 651 SMART arm_5 376 416 IPR000225 GO:0005515
Bda02g00818 651 SMART arm_5 458 498 IPR000225 GO:0005515
Bda02g00818 651 SUPERFAMILY ARM repeat 342 626 IPR016024 -
Bda02g00818 651 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Bda02g00818 651 CDD RING-Ubox_PUB 260 302 IPR045210 -
Bda02g00818 651 PANTHER U BOX DOMAIN-CONTAINING 7 635 - -
Bda02g00818 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 547 IPR000225 GO:0005515
Bda02g00818 651 SMART Ubox_2 259 322 IPR003613 GO:0004842|GO:0016567
Bda02g00818 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515
Bda02g00818 651 ProSiteProfiles U-box domain profile. 255 329 IPR003613 GO:0004842|GO:0016567
Bda02g00818 651 Gene3D - 524 641 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00818 Bda07g00590 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00818 Bda-Chr2:48770320 Bda14g00363 Bda-Chr14:2631344 0 dispersed
Bda11g01864 Bda-Chr11:53729966 Bda02g00818 Bda-Chr2:48770320 2.29E-33 dispersed
Bda14g01286 Bda-Chr14:13809331 Bda02g00818 Bda-Chr2:48770320 2.80E-33 dispersed
Bda03g00428 Bda-Chr3:3691767 Bda02g00818 Bda-Chr2:48770320 2.61E-07 transposed
Bda14g01525 Bda-Chr14:24922062 Bda02g00818 Bda-Chr2:48770320 7.21E-09 transposed
Bda09g01286 Bda-Chr9:44634210 Bda02g00818 Bda-Chr2:48770320 1.76E-55 transposed
Bda02g00818 Bda-Chr2:48770320 Bda07g00590 Bda-Chr7:7230889 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00818 - - jre:108992985 938.332