Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00818 ATGGAGGGAGATAAAGGCGCCCTCTTGCAGAGTCTGATCAATATAGTCAACGAAATAGCTTCTTTCTCCGATTACGCGTATTCCGTGAAGAAACAGTTTTGCAATTTAGTGAGGAGATTGAAGCTCTTGATTCCGATGTTGGAGGAGATTAGAGACGGAAAAGAGACGCCCCCTGAAGAGACGGTGAAAGCTCTTCTCGCGTTGAAGGAAGCTATGGAGTCAGCTAGGGAGTTGCTCAGATTTGGCAGCGAGGGGAGCAAGATTTATCTGGTTATGGAGAGAGATGAAATTATGAACAAATTCGCCGAAGTGACCGGACGGTTGGAGGGAGCTTTGAGTGAAACTTGCTTTGAGAAACTCGACATTTCGGATGAAATTAAGGAACAGGTCGAGCTTGTTCTTGGTCAGTTTAGACGAGCAGTAGCTCGAGTTGATCTACCCGATATTGAGCTTTATCACGATATACTACACCTTTACAATAAAAACAGTGATTCGACTACAGATCGAGATATTGTCAGACGGGTAGCCGAAAAACTGCAATTATTGGGAATAGCTGATCTTACTCAAGAGTCATTAGCTCTGCACGAGCTGGTGGCTGCTAGCAGTGGAGATCCAGGGGAGAGAATTGAGAAGATGTCAATGCTACTGAAGAAAATAAAGGATCTTGTTCAAACCGAAAATCTCGATACTTTCCCGAATGAGAAGATTCTAGGCCCTAGTTGTAGTGGACAAGTATCTCCCATCAAAAATCGAAACCTTCCTGTTGTTCCAGATGACTTTCGCTGTCCTATATCCCTCGATTTGATGAAGGATCCTGTCATTGTGTCTACCGGTCAGACCTATGATCGATCCTGCATCAAGAAGTGGTTGGATGCAGGGCATGGGACGTGCCCAAAGACACAGCAGGTCCTTACGAGAACCACTCTTACACCAAATTATGTGTTGCGAAGTCTCATCGAGCAATGGTGCGAAACGCATGGCATTGACCCGCCAAAACGGCCGACCAAAACTGCTTCGTCTCTTCATGAGGGCAGTAACATTGAAATTCTCATCTCCAAACTATCGATAGGAAACCTTGACGAACAGAGATCGGCGGCTTGTGAGATCCGACTTCTTGCCAAGCGCAATGCCGATAATCGTGTGGCCATTGCTGAAGCAGGTGCAATTCCTCCTCTTGTCAGCCTCCTTTCAGATTTTGATTCCCGCACGCAGGAACATGCTGTGACGGCCCTACTTAACTTGTCGATATGCGAAGATAACAAGAGACGAATCATGGCTTGTTCGGCGATTCCGGGTATCGTTCATGTTTTGAAGAAAGGAAGTATGGAGGCTCGAGAAAATGCGGCAGCCACTCTTTTCAGCCTTTCTGTTCGAGATCAAAACAAGATAATAATTGGTTCATTAGGAGCAATCCCTCCACTGGCGACACTTTTGAGCGAAGGTACACAGAGGGGAAAGAAAGATGCAGCCACAGCACTTTTCAATCTGTGCATTTACCAAGGGAACAAGGGTAAGGCAGTAAGAGCCGGAGTTGTTCCGACTCTTATGCGGCTTCTGACGGAACCCGGAGGAGGAATGTTGGATGAGGCTCTGGCTGTTTTAGCAATACTAGCCAGTCATCCTGAAGGGAAAGCTGCCATTGGAGCTGCGCGGGCAGTGCCGGTTCTGGTACAGGTTATCGGAAATGGATCCTCGAGAAACAGAGAGAATGCCGCTGCTGTTTTGGTGCATCTTATCGCCGGAGATCACTGTCATTTGGTGGAAGCTAAAGAGCTTGGAGTGATGGATTCGCTAATAGATATGGCACAAAATGGAACTGATAGAGGCAAACGAAAAGCTGCCCAGTTGCTCGAGCGCATGACTCGATTTGTCGAGGATCAGACACAAGCTGAGGCTCAGGGAGAGACTCAATCTCATGCCCAAACACCCTCTCCTCCGCTCACTGCCGATAGTTGA 1956 47.29 MEGDKGALLQSLINIVNEIASFSDYAYSVKKQFCNLVRRLKLLIPMLEEIRDGKETPPEETVKALLALKEAMESARELLRFGSEGSKIYLVMERDEIMNKFAEVTGRLEGALSETCFEKLDISDEIKEQVELVLGQFRRAVARVDLPDIELYHDILHLYNKNSDSTTDRDIVRRVAEKLQLLGIADLTQESLALHELVAASSGDPGERIEKMSMLLKKIKDLVQTENLDTFPNEKILGPSCSGQVSPIKNRNLPVVPDDFRCPISLDLMKDPVIVSTGQTYDRSCIKKWLDAGHGTCPKTQQVLTRTTLTPNYVLRSLIEQWCETHGIDPPKRPTKTASSLHEGSNIEILISKLSIGNLDEQRSAACEIRLLAKRNADNRVAIAEAGAIPPLVSLLSDFDSRTQEHAVTALLNLSICEDNKRRIMACSAIPGIVHVLKKGSMEARENAAATLFSLSVRDQNKIIIGSLGAIPPLATLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEPGGGMLDEALAVLAILASHPEGKAAIGAARAVPVLVQVIGNGSSRNRENAAAVLVHLIAGDHCHLVEAKELGVMDSLIDMAQNGTDRGKRKAAQLLERMTRFVEDQTQAEAQGETQSHAQTPSPPLTADS 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48770320 48772965 - Bda006259.1 Bda02g00818 3113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00818 651 Gene3D - 7 118 IPR036537 GO:0007166
Bda02g00818 651 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 635 - -
Bda02g00818 651 MobiDBLite consensus disorder prediction 623 651 - -
Bda02g00818 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 329 IPR013083 -
Bda02g00818 651 SUPERFAMILY RING/U-box 254 331 - -
Bda02g00818 651 MobiDBLite consensus disorder prediction 626 651 - -
Bda02g00818 651 Pfam Armadillo/beta-catenin-like repeat 459 497 IPR000225 GO:0005515
Bda02g00818 651 Pfam Armadillo/beta-catenin-like repeat 376 415 IPR000225 GO:0005515
Bda02g00818 651 Gene3D - 338 523 IPR011989 -
Bda02g00818 651 SMART arm_5 540 580 IPR000225 GO:0005515
Bda02g00818 651 SMART arm_5 417 457 IPR000225 GO:0005515
Bda02g00818 651 SMART arm_5 499 539 IPR000225 GO:0005515
Bda02g00818 651 SMART arm_5 581 622 IPR000225 GO:0005515
Bda02g00818 651 SMART arm_5 376 416 IPR000225 GO:0005515
Bda02g00818 651 SMART arm_5 458 498 IPR000225 GO:0005515
Bda02g00818 651 SUPERFAMILY ARM repeat 342 626 IPR016024 -
Bda02g00818 651 Pfam U-box domain 256 326 IPR003613 GO:0004842|GO:0016567
Bda02g00818 651 CDD RING-Ubox_PUB 260 302 IPR045210 -
Bda02g00818 651 PANTHER U BOX DOMAIN-CONTAINING 7 635 - -
Bda02g00818 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 547 IPR000225 GO:0005515
Bda02g00818 651 SMART Ubox_2 259 322 IPR003613 GO:0004842|GO:0016567
Bda02g00818 651 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 429 IPR000225 GO:0005515
Bda02g00818 651 ProSiteProfiles U-box domain profile. 255 329 IPR003613 GO:0004842|GO:0016567
Bda02g00818 651 Gene3D - 524 641 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00818 - - - jre:108992985 938.332
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda02g00818 Bda07g00590 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00818 Bda-Chr2:48770320 Bda14g00363 Bda-Chr14:2631344 0 dispersed
Bda11g01864 Bda-Chr11:53729966 Bda02g00818 Bda-Chr2:48770320 2.29E-33 dispersed
Bda14g01286 Bda-Chr14:13809331 Bda02g00818 Bda-Chr2:48770320 2.80E-33 dispersed
Bda03g00428 Bda-Chr3:3691767 Bda02g00818 Bda-Chr2:48770320 2.61E-07 transposed
Bda14g01525 Bda-Chr14:24922062 Bda02g00818 Bda-Chr2:48770320 7.21E-09 transposed
Bda09g01286 Bda-Chr9:44634210 Bda02g00818 Bda-Chr2:48770320 1.76E-55 transposed
Bda02g00818 Bda-Chr2:48770320 Bda07g00590 Bda-Chr7:7230889 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g428 . Blo03g01237 Bda02g00818 . . Bpe08g01367 Bma14g00501 . Cmo13g00131 . Cma01g00596 Cma13g00132 Car01g00541 Car13g00102 . . Cpe20g00814 Bhi08g00620 . . . . . . Cla02g01975 Cam02g2095 Cec02g2133 Cco02g2163 Clacu02g2083 Cmu02g2020 Cre02g2329 . . Cone18ag0344 Cone11ag1246 Lsi02g01363 Csa06g01498 Chy11g01242 Cme11g01284 . Blo14g00121 Bda07g00590 . . Bpe11g00764 . Bma11g00122 Sed05g2955 . . . Cma20g00410 . Car20g00358 . . Bhi10g00688 Tan05g0378 Cmetu11g2533 . . . . Cla03g00152 Cam03g0158 Cec03g0157 Cco03g0164 Clacu03g0161 Cmu03g0778 Cre03g0473 . Csa01g02400 Chy12g00185 Cme12g00199
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda13g01704 . 1 1018 U-box Gene Family AT5G15400 73.3 0.0e+00 1481.1
Bda04g00508 . 1 781 U-box Gene Family AT3G54790 52.0 1.6e-125 447.2
Bda04g00003 . 1 576 U-box Gene Family AT2G23140 58.7 1.5e-76 284.3
Bda14g01265 . 195 724 U-box Gene Family AT2G23140 53.5 1.7e-72 270.8
Bda09g01286 . 1 359 U-box Gene Family AT4G21350 58.4 4.8e-115 411.4
Bda01g01749 . 1 360 U-box Gene Family AT4G21350 61.0 1.1e-114 410.2
Bda12g00757 . 134 457 U-box Gene Family AT3G07360 52.6 1.3e-84 310.1
Bda10g00536 . 134 457 U-box Gene Family AT3G07360 58.2 2.6e-77 285.8
Bda14g01078 . 202 414 U-box Gene Family AT1G71020 64.5 9.9e-73 271.2
Bda14g01065 . 238 467 U-box Gene Family AT1G71020 60.2 6.0e-70 261.9
Bda14g00363 . 213 385 U-box Gene Family AT1G71020 57.4 1.2e-49 194.5
Bda07g00590 CCT 254 421 U-box Gene Family AT1G71020 57.2 1.6e-46 184.1
Bda02g00818 CCT 249 418 U-box Gene Family AT1G71020 55.6 2.1e-46 183.7
Bda14g01078 . 1 618 U-box Gene Family AT1G23030 55.7 1.7e-106 383.6
Bda07g00590 CCT 89 632 U-box Gene Family AT2G28830 57.8 3.6e-101 365.9
Bda02g00818 CCT 89 634 U-box Gene Family AT2G28830 58.1 9.1e-97 351.3
Bda07g00590 CCT 1 630 U-box Gene Family AT3G46510 67.8 1.7e-155 546.6
Bda02g00818 CCT 1 627 U-box Gene Family AT3G46510 64.4 1.0e-144 510.8
Bda14g00363 . 4 587 U-box Gene Family AT3G46510 59.2 1.3e-120 430.6
Bda01g01561 . 26 639 U-box Gene Family AT3G46510 51.4 1.1e-95 347.8
Bda14g00363 . 3 588 U-box Gene Family AT3G54850 67.0 1.6e-150 530.0
Bda07g00590 CCT 8 621 U-box Gene Family AT3G54850 54.9 2.4e-103 373.2
Bda01g01561 . 34 643 U-box Gene Family AT5G42340 63.6 7.3e-143 504.6
Bda06g00438 . 18 636 U-box Gene Family AT5G42340 59.1 6.7e-112 401.7
Bda01g00060 . 9 655 U-box Gene Family AT5G01830 56.2 3.0e-192 668.7
Bda07g00963 . 1 600 U-box Gene Family AT1G29340 53.1 3.2e-192 668.7
Bda03g01627 BCT 3 405 U-box Gene Family AT3G52450 55.6 5.7e-128 454.5
Bda09g01389 . 25 167 U-box Gene Family AT3G52450 51.4 8.5e-39 158.3
Bda03g01627 BCT 3 404 U-box Gene Family AT2G35930 56.0 1.0e-126 450.3
Bda05g01129 BCT 3 204 U-box Gene Family AT2G35930 53.7 3.8e-57 219.2
Bda09g01389 . 25 166 U-box Gene Family AT2G35930 50.3 4.4e-37 152.5
Bda04g00334 . 58 216 U-box Gene Family AT5G64660 60.0 2.5e-48 189.9
Bda04g00334 . 58 216 U-box Gene Family AT5G09800 59.1 3.1e-43 172.9
Bda14g01286 . 1 449 U-box Gene Family AT3G49810 71.9 6.0e-181 630.6
Bda11g01486 . 1 450 U-box Gene Family AT3G49810 70.5 1.6e-178 622.5
Bda14g01286 . 1 449 U-box Gene Family AT5G65920 67.4 7.8e-165 577.0
Bda11g01486 . 1 450 U-box Gene Family AT5G65920 66.3 3.9e-164 574.7
Bda11g00250 . 33 822 U-box Gene Family AT2G45910 50.6 1.3e-221 766.5
Bda06g00764 . 17 788 U-box Gene Family AT4G25160 51.8 1.1e-209 726.9
Bda01g01564 BCT 4 813 U-box Gene Family AT1G76390 63.7 1.0e-279 959.5
Bda11g00977 BCT 12 812 U-box Gene Family AT1G76390 60.4 2.4e-265 911.8
Bda01g01564 BCT 7 813 U-box Gene Family AT1G20780 64.0 1.0e-284 976.1
Bda11g00977 BCT 12 812 U-box Gene Family AT1G20780 60.2 2.6e-267 918.3
Bda10g00010 . 1 598 U-box Gene Family AT5G67530 76.4 2.2e-263 904.8
Bda13g00041 BCT 1 524 U-box Gene Family AT1G04510 72.4 3.9e-224 774.2
Bda11g00647 BCT 2 522 U-box Gene Family AT1G04510 72.0 8.5e-219 756.5
Bda13g00041 BCT 1 488 U-box Gene Family AT2G33340 72.7 3.0e-210 728.0
Bda11g00647 BCT 2 486 U-box Gene Family AT2G33340 72.4 4.5e-206 714.1
Bda05g00836 . 10 279 U-box Gene Family AT3G07370 67.0 2.0e-105 379.0
Bda12g00756 . 8 277 U-box Gene Family AT3G07370 61.5 4.8e-96 347.8
Bda12g00767 . 4 118 U-box Gene Family AT3G07370 61.7 2.1e-38 156.4
Bda13g01704 . 1 1018 U-box Gene Family AT5G15400 73.3 0.0e+00 1481.1
Bda04g00508 . 1 781 U-box Gene Family AT3G54790 52.0 1.6e-125 447.2
Bda04g00003 . 1 576 U-box Gene Family AT2G23140 58.7 1.5e-76 284.3
Bda14g01265 . 195 724 U-box Gene Family AT2G23140 53.5 1.7e-72 270.8
Bda09g01286 . 1 359 U-box Gene Family AT4G21350 58.4 4.8e-115 411.4
Bda01g01749 . 1 360 U-box Gene Family AT4G21350 61.0 1.1e-114 410.2
Bda12g00757 . 134 457 U-box Gene Family AT3G07360 52.6 1.3e-84 310.1
Bda10g00536 . 134 457 U-box Gene Family AT3G07360 58.2 2.6e-77 285.8
Bda14g01078 . 202 414 U-box Gene Family AT1G71020 64.5 9.9e-73 271.2
Bda14g01065 . 238 467 U-box Gene Family AT1G71020 60.2 6.0e-70 261.9
Bda14g00363 . 213 385 U-box Gene Family AT1G71020 57.4 1.2e-49 194.5
Bda07g00590 CCT 254 421 U-box Gene Family AT1G71020 57.2 1.6e-46 184.1
Bda02g00818 CCT 249 418 U-box Gene Family AT1G71020 55.6 2.1e-46 183.7
Bda14g01078 . 1 618 U-box Gene Family AT1G23030 55.7 1.7e-106 383.6
Bda07g00590 CCT 89 632 U-box Gene Family AT2G28830 57.8 3.6e-101 365.9
Bda02g00818 CCT 89 634 U-box Gene Family AT2G28830 58.1 9.1e-97 351.3
Bda07g00590 CCT 1 630 U-box Gene Family AT3G46510 67.8 1.7e-155 546.6
Bda02g00818 CCT 1 627 U-box Gene Family AT3G46510 64.4 1.0e-144 510.8
Bda14g00363 . 4 587 U-box Gene Family AT3G46510 59.2 1.3e-120 430.6
Bda01g01561 . 26 639 U-box Gene Family AT3G46510 51.4 1.1e-95 347.8
Bda14g00363 . 3 588 U-box Gene Family AT3G54850 67.0 1.6e-150 530.0
Bda07g00590 CCT 8 621 U-box Gene Family AT3G54850 54.9 2.4e-103 373.2
Bda01g01561 . 34 643 U-box Gene Family AT5G42340 63.6 7.3e-143 504.6
Bda06g00438 . 18 636 U-box Gene Family AT5G42340 59.1 6.7e-112 401.7
Bda01g00060 . 9 655 U-box Gene Family AT5G01830 56.2 3.0e-192 668.7
Bda07g00963 . 1 600 U-box Gene Family AT1G29340 53.1 3.2e-192 668.7
Bda03g01627 BCT 3 405 U-box Gene Family AT3G52450 55.6 5.7e-128 454.5
Bda09g01389 . 25 167 U-box Gene Family AT3G52450 51.4 8.5e-39 158.3
Bda03g01627 BCT 3 404 U-box Gene Family AT2G35930 56.0 1.0e-126 450.3
Bda05g01129 BCT 3 204 U-box Gene Family AT2G35930 53.7 3.8e-57 219.2
Bda09g01389 . 25 166 U-box Gene Family AT2G35930 50.3 4.4e-37 152.5
Bda04g00334 . 58 216 U-box Gene Family AT5G64660 60.0 2.5e-48 189.9
Bda04g00334 . 58 216 U-box Gene Family AT5G09800 59.1 3.1e-43 172.9
Bda14g01286 . 1 449 U-box Gene Family AT3G49810 71.9 6.0e-181 630.6
Bda11g01486 . 1 450 U-box Gene Family AT3G49810 70.5 1.6e-178 622.5
Bda14g01286 . 1 449 U-box Gene Family AT5G65920 67.4 7.8e-165 577.0
Bda11g01486 . 1 450 U-box Gene Family AT5G65920 66.3 3.9e-164 574.7
Bda11g00250 . 33 822 U-box Gene Family AT2G45910 50.6 1.3e-221 766.5
Bda06g00764 . 17 788 U-box Gene Family AT4G25160 51.8 1.1e-209 726.9
Bda01g01564 BCT 4 813 U-box Gene Family AT1G76390 63.7 1.0e-279 959.5
Bda11g00977 BCT 12 812 U-box Gene Family AT1G76390 60.4 2.4e-265 911.8
Bda01g01564 BCT 7 813 U-box Gene Family AT1G20780 64.0 1.0e-284 976.1
Bda11g00977 BCT 12 812 U-box Gene Family AT1G20780 60.2 2.6e-267 918.3
Bda10g00010 . 1 598 U-box Gene Family AT5G67530 76.4 2.2e-263 904.8
Bda13g00041 BCT 1 524 U-box Gene Family AT1G04510 72.4 3.9e-224 774.2
Bda11g00647 BCT 2 522 U-box Gene Family AT1G04510 72.0 8.5e-219 756.5
Bda13g00041 BCT 1 488 U-box Gene Family AT2G33340 72.7 3.0e-210 728.0
Bda11g00647 BCT 2 486 U-box Gene Family AT2G33340 72.4 4.5e-206 714.1
Bda05g00836 . 10 279 U-box Gene Family AT3G07370 67.0 2.0e-105 379.0
Bda12g00756 . 8 277 U-box Gene Family AT3G07370 61.5 4.8e-96 347.8
Bda12g00767 . 4 118 U-box Gene Family AT3G07370 61.7 2.1e-38 156.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004307 2 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda02g00818 Bda_Chr02 FPKM 49.624031 47.453671 69.704742 75.165482 19.400887 21.199814 22.876268 76.59938 75.937424