Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda02g00833 | ATGGCGATTCACAAACCGGAGCTAGGTTCTAACCTCAACTCCAATCAACCTGCAAAGCTTCGTTGGGGTGAGCTTGAGGAGGACGATGGAGAGGACCTCGACTTTTTTTTCCCTCCTAAGCAGGTAATCGGACCCGATGAGAATGGAATTAAGAAAGTTATCGAATATAAATTGAACAATGATGGTAACAAGGTTAAGATCACCACCATAAGTCGCATTCGTAAGCTCGCAAATGCTAGGCTCAGCAAACAAGCCGTGGAGCGTAGATCTTGGCCTAAGTTCGGAGATGCGGTTCACGAAGAAGTTGGTAGCAGGCTAACCATGGTCTCCACTGAAGAGATTGTCCTCGAGCGCCCGAGGGCTCCTGGTACCAAAACAGAGGAGCCAAAGGTTGCTGGTGATTCGTTAAACCAACTTAATAAAGGCGCTGTTCTCATGGTTTGTAGAACTTGTGGAAAGAAAGGTGACCATTGGACTTCAAGGTGCCCTTACAAGGATCTAGCTCCACAGGCAGAGGGGTTAGTGGATAAGCCTGTTGCATCTGATACTACTGCAGGTGCTTCAGGCCCTAGTAAAGGAGCATATGTACCCCCCAGCATGAGAGCAGGGGCCGAGAAAACAGGAACTGACATGAGACGCCGGAACGACGAGAACTCTGTTCGTGTTACCAATCTCTCGGAGGACACACGTGAGCCTGACCTGCATGAGCTTTTCCGACCTTTTGGTGCCATAAGCCGTGTATACGTGGCTATTGATCAGAAGACAGGAATGAGCAGAGGATTTGGTTTTGTCAACTTTGTCAACAGGGAAGAAGCTCAGAGAGCTATCAACAAACTCAATGGGTACGGCTATGACAACCTCATCCTCAGAGTGGAATGGGCCACTCCTAGAGCAAATTAG | 900 | 48.56 | MAIHKPELGSNLNSNQPAKLRWGELEEDDGEDLDFFFPPKQVIGPDENGIKKVIEYKLNNDGNKVKITTISRIRKLANARLSKQAVERRSWPKFGDAVHEEVGSRLTMVSTEEIVLERPRAPGTKTEEPKVAGDSLNQLNKGAVLMVCRTCGKKGDHWTSRCPYKDLAPQAEGLVDKPVASDTTAGASGPSKGAYVPPSMRAGAEKTGTDMRRRNDENSVRVTNLSEDTREPDLHELFRPFGAISRVYVAIDQKTGMSRGFGFVNFVNREEAQRAINKLNGYGYDNLILRVEWATPRAN | 299 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 48902604 | 48904348 | - | Bda006272.1 | Bda02g00833 | 3128 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda02g00833 | 299 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 17 | 299 | - | - | |
Bda02g00833 | 299 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 218 | 296 | IPR000504 | GO:0003723 | |
Bda02g00833 | 299 | PIRSF | Transl_init_eIF-3_RNA-bind | 12 | 299 | IPR017334 | GO:0003743|GO:0005737|GO:0005852 | |
Bda02g00833 | 299 | CDD | eIF3G | 48 | 166 | IPR024675 | - | |
Bda02g00833 | 299 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 220 | 286 | IPR000504 | GO:0003723 | |
Bda02g00833 | 299 | MobiDBLite | consensus disorder prediction | 180 | 209 | - | - | |
Bda02g00833 | 299 | Gene3D | - | 181 | 299 | IPR012677 | - | |
Bda02g00833 | 299 | Hamap | Eukaryotic translation initiation factor 3 subunit G [EIF3G]. | 19 | 298 | IPR017334 | GO:0003743|GO:0005737|GO:0005852 | |
Bda02g00833 | 299 | SMART | rrm1_1 | 219 | 292 | IPR000504 | GO:0003723 | |
Bda02g00833 | 299 | Pfam | Eukaryotic translation initiation factor 3 subunit G | 41 | 167 | IPR024675 | - | |
Bda02g00833 | 299 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G | 17 | 299 | - | - | |
Bda02g00833 | 299 | SUPERFAMILY | RNA-binding domain, RBD | 216 | 298 | IPR035979 | GO:0003676 | |
Bda02g00833 | 299 | CDD | RRM_eIF3G_like | 219 | 294 | IPR034240 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda02g00833 | Bda-Chr2:48902604 | Bda01g02121 | Bda-Chr1:57246784 | 1.02E-11 | dispersed | |
Bda09g00311 | Bda-Chr9:3942184 | Bda02g00833 | Bda-Chr2:48902604 | 5.75E-11 | dispersed | |
Bda09g00314 | Bda-Chr9:4029128 | Bda02g00833 | Bda-Chr2:48902604 | 6.98E-11 | dispersed | |
Bda02g00833 | Bda-Chr2:48902604 | Bda10g00883 | Bda-Chr10:43282626 | 4.34E-11 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda02g00833 | K03248 | - | jre:109017816 | 496.893 |