Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00833 ATGGCGATTCACAAACCGGAGCTAGGTTCTAACCTCAACTCCAATCAACCTGCAAAGCTTCGTTGGGGTGAGCTTGAGGAGGACGATGGAGAGGACCTCGACTTTTTTTTCCCTCCTAAGCAGGTAATCGGACCCGATGAGAATGGAATTAAGAAAGTTATCGAATATAAATTGAACAATGATGGTAACAAGGTTAAGATCACCACCATAAGTCGCATTCGTAAGCTCGCAAATGCTAGGCTCAGCAAACAAGCCGTGGAGCGTAGATCTTGGCCTAAGTTCGGAGATGCGGTTCACGAAGAAGTTGGTAGCAGGCTAACCATGGTCTCCACTGAAGAGATTGTCCTCGAGCGCCCGAGGGCTCCTGGTACCAAAACAGAGGAGCCAAAGGTTGCTGGTGATTCGTTAAACCAACTTAATAAAGGCGCTGTTCTCATGGTTTGTAGAACTTGTGGAAAGAAAGGTGACCATTGGACTTCAAGGTGCCCTTACAAGGATCTAGCTCCACAGGCAGAGGGGTTAGTGGATAAGCCTGTTGCATCTGATACTACTGCAGGTGCTTCAGGCCCTAGTAAAGGAGCATATGTACCCCCCAGCATGAGAGCAGGGGCCGAGAAAACAGGAACTGACATGAGACGCCGGAACGACGAGAACTCTGTTCGTGTTACCAATCTCTCGGAGGACACACGTGAGCCTGACCTGCATGAGCTTTTCCGACCTTTTGGTGCCATAAGCCGTGTATACGTGGCTATTGATCAGAAGACAGGAATGAGCAGAGGATTTGGTTTTGTCAACTTTGTCAACAGGGAAGAAGCTCAGAGAGCTATCAACAAACTCAATGGGTACGGCTATGACAACCTCATCCTCAGAGTGGAATGGGCCACTCCTAGAGCAAATTAG 900 48.56 MAIHKPELGSNLNSNQPAKLRWGELEEDDGEDLDFFFPPKQVIGPDENGIKKVIEYKLNNDGNKVKITTISRIRKLANARLSKQAVERRSWPKFGDAVHEEVGSRLTMVSTEEIVLERPRAPGTKTEEPKVAGDSLNQLNKGAVLMVCRTCGKKGDHWTSRCPYKDLAPQAEGLVDKPVASDTTAGASGPSKGAYVPPSMRAGAEKTGTDMRRRNDENSVRVTNLSEDTREPDLHELFRPFGAISRVYVAIDQKTGMSRGFGFVNFVNREEAQRAINKLNGYGYDNLILRVEWATPRAN 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 48902604 48904348 - Bda006272.1 Bda02g00833 3128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00833 299 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 17 299 - -
Bda02g00833 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 296 IPR000504 GO:0003723
Bda02g00833 299 PIRSF Transl_init_eIF-3_RNA-bind 12 299 IPR017334 GO:0003743|GO:0005737|GO:0005852
Bda02g00833 299 CDD eIF3G 48 166 IPR024675 -
Bda02g00833 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 286 IPR000504 GO:0003723
Bda02g00833 299 MobiDBLite consensus disorder prediction 180 209 - -
Bda02g00833 299 Gene3D - 181 299 IPR012677 -
Bda02g00833 299 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 19 298 IPR017334 GO:0003743|GO:0005737|GO:0005852
Bda02g00833 299 SMART rrm1_1 219 292 IPR000504 GO:0003723
Bda02g00833 299 Pfam Eukaryotic translation initiation factor 3 subunit G 41 167 IPR024675 -
Bda02g00833 299 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 17 299 - -
Bda02g00833 299 SUPERFAMILY RNA-binding domain, RBD 216 298 IPR035979 GO:0003676
Bda02g00833 299 CDD RRM_eIF3G_like 219 294 IPR034240 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00833 Bda-Chr2:48902604 Bda01g02121 Bda-Chr1:57246784 1.02E-11 dispersed
Bda09g00311 Bda-Chr9:3942184 Bda02g00833 Bda-Chr2:48902604 5.75E-11 dispersed
Bda09g00314 Bda-Chr9:4029128 Bda02g00833 Bda-Chr2:48902604 6.98E-11 dispersed
Bda02g00833 Bda-Chr2:48902604 Bda10g00883 Bda-Chr10:43282626 4.34E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00833 K03248 - jre:109017816 496.893