Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00852 ATGGAGGTCTCATGGGAGGAAAGCGTCACAGATTCAATAAACACGGTATACCTTCTCTTTTCTGCGTATCTTGTGTTTGTAATGCAACTTGGGTTCGCGATGCTCTGTGCTGGCTCTGTTCGGGCCAAGAACGCCATGAACATAATGCTCACCAACGTGGTTGACGCCGTTGTTGGTAGCATCTCCTACTATCTCTTCGGTTTTGCTTTTGCGTTTGGCGATGGTTCTAGCTCCAATCCTTTCATTGGGTCAACCTATTTTGCTCTCGCAGACATCCCCAGTAGCTCCTATGATTACAGCTTCTTTCTTTACCAATGGGCCTTCGCCATAGCTGTCGCCGGTATAACCAGCGGCTCCATAGCTGAGCGAACTCAGTTCCCTTCCTACCTTATTTTCTCCTTTTTCCTCACTGGGTTTGTGTATCCTATCGTGGTTCACTGGATTTGGTCCTCCAGCGGGTGGCTCAGTCCGAATTCCAGCAATTTGCTGTTTGATTCCGGAGCAATTGACTTCGCCGGGAGTGGCGTGGTGCATTTAGTGGGTGGGATTGCCGGGCTTTGGGGCGCTTTGATTGAAGGGCCACGGGTCGGGCGGTTTGATGCATTTGGAAAGCCGGTGCCGATGAGAGGGCACAATGCGACGCTGGTGGTTCTTGGTACATTCTTGCTGTGGTTTGGGTGGTTTGGATTCAACCCAGGTTCGTTTGATAAGATTCTGGTGTCCTACCCAGGCACAACGAACGAGGGTAATTGGACTGGAGTTGGTCGGACTGCAGTTAACACTACATTAGCTGGGTCTGCCGCCGGATTGACAACTCTTTTCGGCCGACGATTACTCATCGGCCACTGGGACGCCTTGGACGTCTGCAATGGTTTGCTTGGTGGGTTTGTCGCCATCACGTCAGGCTGTTCTGTGGTCGAACCATGGGCAGCGATCGTGTGTGGGTTTGTGGCCGCTTGGGTACTGATTGGGCTAAACATTTTGGCACTCAAACTGGGATTTGACGACCCACTGGAGGCCACCCAATTGCACGGCGGCTGCGGGATGTGGGGGGTGATATTCACTGGCTTATTTGCCAAAAAGGAATTCGTCATTGATGCCTACAATGCCGGAGACACCAGCGTGGTCCGACCATACGGACTCTTACTCGGCGGAGGATGGAAGCTATTTGGAGCTCAAGTGATCGAAGTTTTAGTGATTGTGGGTTGGGTTAGCTTGACGATGGGTCCCCTTTTTTTTGGCCTTCACAAGCTTGGAATTTTGAGGATCACAACCGAGGAAGAAGTTGCAGGTCTCGACATATCCAGCCATGGTGGATATGCATACAGTCATTCGGAGGATAATCAACCTCGATTTTACGCTGATTACCTTCGCCTACAACCTCGACAATCTTGA 1395 51.04 MEVSWEESVTDSINTVYLLFSAYLVFVMQLGFAMLCAGSVRAKNAMNIMLTNVVDAVVGSISYYLFGFAFAFGDGSSSNPFIGSTYFALADIPSSSYDYSFFLYQWAFAIAVAGITSGSIAERTQFPSYLIFSFFLTGFVYPIVVHWIWSSSGWLSPNSSNLLFDSGAIDFAGSGVVHLVGGIAGLWGALIEGPRVGRFDAFGKPVPMRGHNATLVVLGTFLLWFGWFGFNPGSFDKILVSYPGTTNEGNWTGVGRTAVNTTLAGSAAGLTTLFGRRLLIGHWDALDVCNGLLGGFVAITSGCSVVEPWAAIVCGFVAAWVLIGLNILALKLGFDDPLEATQLHGGCGMWGVIFTGLFAKKEFVIDAYNAGDTSVVRPYGLLLGGGWKLFGAQVIEVLVIVGWVSLTMGPLFFGLHKLGILRITTEEEVAGLDISSHGGYAYSHSEDNQPRFYADYLRLQPRQS 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49006320 49007714 + Bda006291.1 Bda02g00852 3147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00852 464 Pfam Ammonium Transporter Family 17 442 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bda02g00852 464 PANTHER AMMONIUM TRANSPORTER 1 461 - -
Bda02g00852 464 SUPERFAMILY Ammonium transporter 10 423 - -
Bda02g00852 464 TIGRFAM amt: ammonium transporter 14 442 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bda02g00852 464 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 3 1 461 - -
Bda02g00852 464 ProSitePatterns Ammonium transporters signature. 170 195 IPR018047 GO:0008519|GO:0016020|GO:0072488
Bda02g00852 464 Gene3D Ammonium transporter AmtB like domains 3 458 IPR029020 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda02g00852 Bda09g01532 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00852 Bda-Chr2:49006320 Bda07g01164 Bda-Chr7:13855341 0 dispersed
Bda02g00852 Bda-Chr2:49006320 Bda05g00918 Bda-Chr5:57768064 9.17E-23 wgd
Bda02g00852 Bda-Chr2:49006320 Bda09g01532 Bda-Chr9:46997618 5.29E-40 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00852 K03320 - pvy:116129597 798.505