Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00883 ATGGCGGCTTCTTTTGGGAGCATAGACCCGCCTGCGAATTCCCATCCACACTTAACTTTCACCATACCCTCCTTCTCCGAGCTCTTGAGGTATGGTTCCGATGAGGTACAGCCAACCGGCAGTAATGGCCGCCTCGGATTGTCGGATCGAACAGCGGAACGAACCGGGTCGGGTGTGCCCAAGTTCAAGTCTTTTTCTCCACCGATACTGCCGTTGTCTCCACCTCCACTTTCTCCCTCTTCTTACTTCTCTATTCTTGCTGGGCTGAGCCCGGCTGAGCTCTTAGACTCCCCTGTTCTCTTTAACTCCTCTAACCATACTCTGCCATCACCGACGACGGGAGCATTTCCATTCCAATCGTTCAACTGGAAGAGTAATTCCGACTTCAGCCAACAGATGATTGAGCCCGCTAGCAAAAAATTGTCTGTTTTCTCCTTTCAAACGCAGCCAAAGCCTCCCTCAGCCAGCTCTAATCCTACTGTATGTGAAGAGAGTCGGATACAAAAATTTCTCAACTCTCAGCCTCAGCAACAGGCATGGAGCTCTCAAGAACCATCGAAGCAGAACGAATTTTCATTGGGAATGGATGCAAAACAGGGTGATTTCACATCGAAAAAGATAGTTCATCGTCCAAACAATGGAGTTATCCAATCGAATCACAGCAACCGCCAACAGGGTCAGTCAGTGAGCAGAGGCTCCGACGATGGTTACAACTGGAGAAAGTACGGCCAGAAAGAGGTGAAAGGAAGCGAAAATCCAAGAAGTTATTACAAATGCACATTCCCCAGTTGCCCCACTAAGAAGAAGGTGGAAAGGTCGTTAGACGGCCAAATTACTGAAATTGTCTACAAGGGCAGCCATAGCCATCCAAAACCTCAGCCTACCAGAAAATCCTCATCATCATCATTTTTAGCTCCTTTTCAGTCAATTCAAGCTTCTAATCTTGCTCTCAACGGCGCCCCTGAACTTTCATCTGCCTCCCACTCCGCTGCAACGCCTGAAAATTCCTCCATAACAATGGGGGAAGATGATTTTGACCAGAGCTCGCATAGCAGTAAACGGGAACGGAATGACTTTGACGAGGACGAACCAGATGCCAAAAGATGCAGTAAAATGGAGGGGGACAAAGAAGGAATGTCAGCAGTTGGATGCAGAACAGTGAGAGAGCCTAGAGTCGTGTTTCAAACCACTAGTGACAGAGATATCTTAGTCGATGGATACAGGTGGAAAAAATATGGGCAGAAAGTCGTGAAGGGAAACCCAAGTCCAAGGAGCTACTACAAGTGCACAAACCCAGAATGTCCTGTGAGAAAGCACGTAGAGAGAGCCTCGAATGATTTAAAATCAGTCATTACGACCTACGAGGGGAAGCACAATCACGATGTTCCAGCCGCTCGTGGAAGCGGCACTAATGCTGTAACCAGGCCATTACCCACGACAATCAAGCCTTTGTCTCTTAGCCATGGTCTAAGGCTACAGAGCTCTCACGGCCAAACACCATTCGACCTGGAAACGATGAGGAGCCCTCCAAGTTTTGGATTCTCCGAATCTCACAACATGTTGTGGCGAAGTAAGGAAGAGATAAAGGATGATGCTTTCTTCGAATCATTGCTACGTTGA 1620 47.96 MAASFGSIDPPANSHPHLTFTIPSFSELLRYGSDEVQPTGSNGRLGLSDRTAERTGSGVPKFKSFSPPILPLSPPPLSPSSYFSILAGLSPAELLDSPVLFNSSNHTLPSPTTGAFPFQSFNWKSNSDFSQQMIEPASKKLSVFSFQTQPKPPSASSNPTVCEESRIQKFLNSQPQQQAWSSQEPSKQNEFSLGMDAKQGDFTSKKIVHRPNNGVIQSNHSNRQQGQSVSRGSDDGYNWRKYGQKEVKGSENPRSYYKCTFPSCPTKKKVERSLDGQITEIVYKGSHSHPKPQPTRKSSSSSFLAPFQSIQASNLALNGAPELSSASHSAATPENSSITMGEDDFDQSSHSSKRERNDFDEDEPDAKRCSKMEGDKEGMSAVGCRTVREPRVVFQTTSDRDILVDGYRWKKYGQKVVKGNPSPRSYYKCTNPECPVRKHVERASNDLKSVITTYEGKHNHDVPAARGSGTNAVTRPLPTTIKPLSLSHGLRLQSSHGQTPFDLETMRSPPSFGFSESHNMLWRSKEEIKDDAFFESLLR 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49193214 49195178 - Bda006323.1 Bda02g00883 3178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00883 539 MobiDBLite consensus disorder prediction 209 240 - -
Bda02g00883 539 MobiDBLite consensus disorder prediction 210 234 - -
Bda02g00883 539 SUPERFAMILY WRKY DNA-binding domain 233 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda02g00883 539 MobiDBLite consensus disorder prediction 346 375 - -
Bda02g00883 539 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 39 493 IPR044810 GO:0003700
Bda02g00883 539 ProSiteProfiles WRKY domain profile. 398 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda02g00883 539 Pfam WRKY DNA -binding domain 405 460 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda02g00883 539 Pfam WRKY DNA -binding domain 234 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda02g00883 539 MobiDBLite consensus disorder prediction 33 60 - -
Bda02g00883 539 Gene3D WRKY domain 218 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda02g00883 539 Gene3D WRKY domain 388 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda02g00883 539 MobiDBLite consensus disorder prediction 324 375 - -
Bda02g00883 539 ProSiteProfiles WRKY domain profile. 234 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda02g00883 539 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 39 493 - -
Bda02g00883 539 SUPERFAMILY WRKY DNA-binding domain 395 463 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda02g00883 539 MobiDBLite consensus disorder prediction 283 303 - -
Bda02g00883 539 MobiDBLite consensus disorder prediction 324 345 - -
Bda02g00883 539 SMART WRKY_cls 403 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda02g00883 539 SMART WRKY_cls 233 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00883 Bda-Chr2:49193214 Bda12g00951 Bda-Chr12:40590110 2.44E-88 dispersed
Bda02g00883 Bda-Chr2:49193214 Bda09g01561 Bda-Chr9:47169033 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15591 PF03106 WRKY 8.90E-24 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00883 K13424 - qsu:112000434 573.548