Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00923 ATAGAAATAATGGAGGCTGGGGGTAATGGCACAACCGGTTTGATGGATTTTGGAGAAAACAGTAACGGGCTTCGTTCAATGATGACGATGATGCATGGTATGAGTTCCCACCATCCTCACGCTAACTCGGACGCAGACAATAGCGCTTCCTTTCTCGCTCTGCCTTCCTCCACTACCAACAAGGCCGATCCAACTCGTGATAGTAGCAGCGGCTGTTCTCTCATGGTCGACGACCGGCACAACAACAGTGCATGGTGCTATTTCATGGACAACCAGAATAATAGTGAAAACAACTCTTCCTCAGCGCTCAAGGCTAAGATCGTGGCTCATCCTCACTACCATCGTCTCTTAGCCGCGTATCTCAATTGTCAAAAGGTTGGGGCTCCGCCGGAAGTGATTCTAAAGCTAGAAGAAGCATGTGCTTCGGCTGCTTCAATGGGCCCAGCCGGCACAGGATGTCTCGGGGAAGATCCGGCTCTCGACCAGTTCATGGAAGCCTACTGTGAGATGCTGATCAAATACGAGCAAGAGCTCGCAAAACCTTTCAAGGAAGCCATGCTTTTTCTTCAAAAAATAGAGTGCCAGTTCAAAGACCTTATTGTTTCTTCAGATACTGGTTGTGAGGAAGGTGAAAGGAATGGATCATCAGAAGAAGAAGTCGATATAGGGAACCAGTTCATTGATCCCCATGCAGAAGATAGGGAGCTCAAGGGTCAGCTTCTGCGCAGGTACAGTGGATATTTAGGAAGCCTCAAGCAGGAATTCATGAAGAAGCGAAAGAAAGGGAAGTTGCCAAAAGAAGCCAGACAACAGTTGCTGGAGTGGTGGACTAGACATTACAAGTGGCCTTACCCATCGGAGGCGCAGAAGGTGGCCCTGGCGGCATCAACTGGTTTGGATCAGAAGCAGATCAACAACTGGTTTATAAATCAAAGGAAAAGGCACTGGAAGCCGTCGGAAGACATGCAGTTTGTTGTGATGGATGCCACTCATTCTCACCCCCAGTATTTCATGGACGGCGTCTTGGCCAGCCCTTTTTCCTTGGGCGTCGCCCCCACCTTGCTCTGA 1068 49.34 IEIMEAGGNGTTGLMDFGENSNGLRSMMTMMHGMSSHHPHANSDADNSASFLALPSSTTNKADPTRDSSSGCSLMVDDRHNNSAWCYFMDNQNNSENNSSSALKAKIVAHPHYHRLLAAYLNCQKVGAPPEVILKLEEACASAASMGPAGTGCLGEDPALDQFMEAYCEMLIKYEQELAKPFKEAMLFLQKIECQFKDLIVSSDTGCEEGERNGSSEEEVDIGNQFIDPHAEDRELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWTRHYKWPYPSEAQKVALAASTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHSHPQYFMDGVLASPFSLGVAPTLL 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49460823 49462792 + Bda006368.1 Bda02g00923 3218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00923 355 SUPERFAMILY Homeodomain-like 257 332 IPR009057 -
Bda02g00923 355 SMART KNOX2_2 150 201 IPR005541 GO:0003677|GO:0005634
Bda02g00923 355 CDD homeodomain 267 319 IPR001356 GO:0003677
Bda02g00923 355 SMART ELK_2 235 256 IPR005539 GO:0003677
Bda02g00923 355 MobiDBLite consensus disorder prediction 33 74 - -
Bda02g00923 355 ProSiteProfiles 'Homeobox' domain profile. 255 318 IPR001356 GO:0003677
Bda02g00923 355 SMART HOX_1 257 322 IPR001356 GO:0003677
Bda02g00923 355 MobiDBLite consensus disorder prediction 40 74 - -
Bda02g00923 355 Pfam ELK domain 235 256 IPR005539 GO:0003677
Bda02g00923 355 SMART KNOX1_2 101 145 IPR005540 GO:0003677|GO:0005634
Bda02g00923 355 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 5 344 - -
Bda02g00923 355 Pfam KNOX2 domain 154 199 IPR005541 GO:0003677|GO:0005634
Bda02g00923 355 ProSiteProfiles ELK domain profile. 235 255 IPR005539 GO:0003677
Bda02g00923 355 ProSitePatterns 'Homeobox' domain signature. 293 316 IPR017970 GO:0000981|GO:0006355
Bda02g00923 355 Pfam KNOX1 domain 102 141 IPR005540 GO:0003677|GO:0005634
Bda02g00923 355 Gene3D - 260 322 - -
Bda02g00923 355 Pfam Homeobox KN domain 275 314 IPR008422 GO:0003677|GO:0006355
Bda02g00923 355 PANTHER - 5 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00923 Bda-Chr2:49460823 Bda14g00697 Bda-Chr14:5191751 1.73E-108 dispersed
Bda02g00923 Bda-Chr2:49460823 Bda09g01593 Bda-Chr9:47367375 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15595 PF03791 KNOX2 5.30E-20 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00923 - - rcu:8277968 499.59