Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda02g00923 | ATAGAAATAATGGAGGCTGGGGGTAATGGCACAACCGGTTTGATGGATTTTGGAGAAAACAGTAACGGGCTTCGTTCAATGATGACGATGATGCATGGTATGAGTTCCCACCATCCTCACGCTAACTCGGACGCAGACAATAGCGCTTCCTTTCTCGCTCTGCCTTCCTCCACTACCAACAAGGCCGATCCAACTCGTGATAGTAGCAGCGGCTGTTCTCTCATGGTCGACGACCGGCACAACAACAGTGCATGGTGCTATTTCATGGACAACCAGAATAATAGTGAAAACAACTCTTCCTCAGCGCTCAAGGCTAAGATCGTGGCTCATCCTCACTACCATCGTCTCTTAGCCGCGTATCTCAATTGTCAAAAGGTTGGGGCTCCGCCGGAAGTGATTCTAAAGCTAGAAGAAGCATGTGCTTCGGCTGCTTCAATGGGCCCAGCCGGCACAGGATGTCTCGGGGAAGATCCGGCTCTCGACCAGTTCATGGAAGCCTACTGTGAGATGCTGATCAAATACGAGCAAGAGCTCGCAAAACCTTTCAAGGAAGCCATGCTTTTTCTTCAAAAAATAGAGTGCCAGTTCAAAGACCTTATTGTTTCTTCAGATACTGGTTGTGAGGAAGGTGAAAGGAATGGATCATCAGAAGAAGAAGTCGATATAGGGAACCAGTTCATTGATCCCCATGCAGAAGATAGGGAGCTCAAGGGTCAGCTTCTGCGCAGGTACAGTGGATATTTAGGAAGCCTCAAGCAGGAATTCATGAAGAAGCGAAAGAAAGGGAAGTTGCCAAAAGAAGCCAGACAACAGTTGCTGGAGTGGTGGACTAGACATTACAAGTGGCCTTACCCATCGGAGGCGCAGAAGGTGGCCCTGGCGGCATCAACTGGTTTGGATCAGAAGCAGATCAACAACTGGTTTATAAATCAAAGGAAAAGGCACTGGAAGCCGTCGGAAGACATGCAGTTTGTTGTGATGGATGCCACTCATTCTCACCCCCAGTATTTCATGGACGGCGTCTTGGCCAGCCCTTTTTCCTTGGGCGTCGCCCCCACCTTGCTCTGA | 1068 | 49.34 | IEIMEAGGNGTTGLMDFGENSNGLRSMMTMMHGMSSHHPHANSDADNSASFLALPSSTTNKADPTRDSSSGCSLMVDDRHNNSAWCYFMDNQNNSENNSSSALKAKIVAHPHYHRLLAAYLNCQKVGAPPEVILKLEEACASAASMGPAGTGCLGEDPALDQFMEAYCEMLIKYEQELAKPFKEAMLFLQKIECQFKDLIVSSDTGCEEGERNGSSEEEVDIGNQFIDPHAEDRELKGQLLRRYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWTRHYKWPYPSEAQKVALAASTGLDQKQINNWFINQRKRHWKPSEDMQFVVMDATHSHPQYFMDGVLASPFSLGVAPTLL | 355 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 49460823 | 49462792 | + | Bda006368.1 | Bda02g00923 | 3218 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda02g00923 | 355 | SUPERFAMILY | Homeodomain-like | 257 | 332 | IPR009057 | - | |
Bda02g00923 | 355 | SMART | KNOX2_2 | 150 | 201 | IPR005541 | GO:0003677|GO:0005634 | |
Bda02g00923 | 355 | CDD | homeodomain | 267 | 319 | IPR001356 | GO:0003677 | |
Bda02g00923 | 355 | SMART | ELK_2 | 235 | 256 | IPR005539 | GO:0003677 | |
Bda02g00923 | 355 | MobiDBLite | consensus disorder prediction | 33 | 74 | - | - | |
Bda02g00923 | 355 | ProSiteProfiles | 'Homeobox' domain profile. | 255 | 318 | IPR001356 | GO:0003677 | |
Bda02g00923 | 355 | SMART | HOX_1 | 257 | 322 | IPR001356 | GO:0003677 | |
Bda02g00923 | 355 | MobiDBLite | consensus disorder prediction | 40 | 74 | - | - | |
Bda02g00923 | 355 | Pfam | ELK domain | 235 | 256 | IPR005539 | GO:0003677 | |
Bda02g00923 | 355 | SMART | KNOX1_2 | 101 | 145 | IPR005540 | GO:0003677|GO:0005634 | |
Bda02g00923 | 355 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 5 | 344 | - | - | |
Bda02g00923 | 355 | Pfam | KNOX2 domain | 154 | 199 | IPR005541 | GO:0003677|GO:0005634 | |
Bda02g00923 | 355 | ProSiteProfiles | ELK domain profile. | 235 | 255 | IPR005539 | GO:0003677 | |
Bda02g00923 | 355 | ProSitePatterns | 'Homeobox' domain signature. | 293 | 316 | IPR017970 | GO:0000981|GO:0006355 | |
Bda02g00923 | 355 | Pfam | KNOX1 domain | 102 | 141 | IPR005540 | GO:0003677|GO:0005634 | |
Bda02g00923 | 355 | Gene3D | - | 260 | 322 | - | - | |
Bda02g00923 | 355 | Pfam | Homeobox KN domain | 275 | 314 | IPR008422 | GO:0003677|GO:0006355 | |
Bda02g00923 | 355 | PANTHER | - | 5 | 344 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda02g00923 | Bda-Chr2:49460823 | Bda14g00697 | Bda-Chr14:5191751 | 1.73E-108 | dispersed | |
Bda02g00923 | Bda-Chr2:49460823 | Bda09g01593 | Bda-Chr9:47367375 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15595 | PF03791 | KNOX2 | 5.30E-20 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda02g00923 | - | - | rcu:8277968 | 499.59 |