Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00925 ATGTACAGCTCATTGAATACCCCTCCCGAGCTAACTAGTTGGAGAAGCAGTAGCGGCGATCCCTGTACAGAGTCATGGAAAGGGATAACTTGTGAGGGTTCAGCCGTTGTTTCTATCGATATTTCTGGGTTAGGACTCCATGGAACAATGGGATATTTGCTCTCCGTCCTACACTCGTTGAAGAAACTCGACATGAGTAGGAATAACATCCAGGGCGAAATCCCTTATCAGTTACCTCCAAATCTGACTTCCCTAAATGTTGCAGGCAATAACTTACGTGGGAATCTTCCTTATTCCCTCTCCAACATCGTTTCTCTTGATTATCTGTCTTTGTTTGAGTGCAGAGATCTTTCTTCCAACAAATTTTCAGGAGATCTTCCCTATTCCATCAGTTCATTGTCCAATCTTTCTTCACTATATTTGGAGAACAATCAGTTGACTGGTTCTCTTAATAGTCTCTCAACTCTACCTTTGACGAATCTAAACGTTGCAAACAACCATTTCAGTGGATGGGTACCTCAAGAGCTTTATTCAATCCCAAACTTTGTTTATGGTGGAAACTCATTTGAGACGGGTCCTGCGCCTCCTCCGCCGCCGTATAGCACACCACCTCCGGGAAGACCTCGCAGAAGTACACCACCCAAGGATTTTGATGCTGGATCATTTCAGCCAGATGGAGGCTTGGCAATTGGAGCAATAGTAGGCATCATTGTCGGGACTGTGGTCGTTTCTCTCATTCTTCTAGTTGTGTTTGCCATTTGTGTTAGAAAGAATAAAAAGCAAAAAACCAGACCTAGGTCTTCCAGTGGGCAATTCCCCGTGGGTTTGGGGTCAAACAATGGTAGATTTCTTTTCTTCTCTGTAATACCCATGTTTCAACGTTCTTCTCTGTTTCTCATTTCTCATGTTTTAGCAGTAACTGCCGTCGCAGAAGAGCAGAGGATAAAGAGTGTGGCAGCTGTCGTAGATCGGAAGTCAACTCCAGCAGAAAACCCGGCATTAGAAAGTTTACATGGGAAAAATGGATCTGTTAAGAGAATAAAGTCTCCGATTACTGCCACTTCCTACACTTTTGCTTCTCTCCAAACAGCAACAAATAGCTTTAGCCAAGAACATCTGGTCGGTGAAGGTTCCCTCGGTCGGGTTTACAGAGCCGACTTCCCAAATGGAAAGACGATGGCGATAAAAAAGGTGGACAGTGCTGCTCTACCGTTACGGGAGGAAGACAATTTTCTTCAACTTGTCTCGAATATGTCTAGATTGAGGCATCCCAACATTGTCACCCTCGTCGGATATTGTGCAGAGCAGGGACAGCGTCTTCTAGTGTATGAATATCTTGGAAATGGTAGTAGTCTTCATGAAATGCTTCACTACACTGAAGATGGCTGGAAGACCCTCAGTTGGAATTCACGGGTTAGAGTCGCCATTGGCAGCGCACGAGCTCTCGAGTATTTGCACGAGGTGTGCTTACCAAGTATCGTGCATAGAAATTTCAAGTCAGCTAACATATTGCTTGACGAAGAGATGAATCCCCACTTGTCGGATTGTGGCTTGGCTGCTCTAGCACCCAACACAGAGCGGCAAATAACAACGCAGCTGGTTGGATCGTTTGGTTACAGTGCTCCGGAATTCGCATTGTCCGGACTATACACCGTCAAGAGTGATGTGTACAGCTTCGGGGTGGTGATGTTAGAGCTACTCACCGGTCGGAAACCTCTTGATAGTTCGAGAACGAGATCGGAACACTCCCTCGTGGGATGGGCCACTCCTCAACTTCATGATATAGATGCCTTGGCAAAAATGGTAGATCCTGCTCTCAATGGGATGTACCCTGCAAAGTCTCTCTCTCGTTTTGCAGACATTATTGCCCTCTGCATCAAGCCGGAGCCAGAACCTCGCCCTCCCATGTCGGAAGTAGTCCAGGCATTGGTACGGTTAGTTCAACGGTCCAGTTTGGTCAAAAGGCGTCCCAGCGATGAATCCAGTTTCGCGTGGAAGACCATAGATCAGGAGGCCATAGACGCATCGTTCTGA 2034 46.36 MYSSLNTPPELTSWRSSSGDPCTESWKGITCEGSAVVSIDISGLGLHGTMGYLLSVLHSLKKLDMSRNNIQGEIPYQLPPNLTSLNVAGNNLRGNLPYSLSNIVSLDYLSLFECRDLSSNKFSGDLPYSISSLSNLSSLYLENNQLTGSLNSLSTLPLTNLNVANNHFSGWVPQELYSIPNFVYGGNSFETGPAPPPPPYSTPPPGRPRRSTPPKDFDAGSFQPDGGLAIGAIVGIIVGTVVVSLILLVVFAICVRKNKKQKTRPRSSSGQFPVGLGSNNGRFLFFSVIPMFQRSSLFLISHVLAVTAVAEEQRIKSVAAVVDRKSTPAENPALESLHGKNGSVKRIKSPITATSYTFASLQTATNSFSQEHLVGEGSLGRVYRADFPNGKTMAIKKVDSAALPLREEDNFLQLVSNMSRLRHPNIVTLVGYCAEQGQRLLVYEYLGNGSSLHEMLHYTEDGWKTLSWNSRVRVAIGSARALEYLHEVCLPSIVHRNFKSANILLDEEMNPHLSDCGLAALAPNTERQITTQLVGSFGYSAPEFALSGLYTVKSDVYSFGVVMLELLTGRKPLDSSRTRSEHSLVGWATPQLHDIDALAKMVDPALNGMYPAKSLSRFADIIALCIKPEPEPRPPMSEVVQALVRLVQRSSLVKRRPSDESSFAWKTIDQEAIDASF 677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49467885 49470739 - Bda006370.1 Bda02g00925 3220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00925 677 SUPERFAMILY L domain-like 11 181 - -
Bda02g00925 677 ProSiteProfiles Protein kinase domain profile. 368 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda02g00925 677 MobiDBLite consensus disorder prediction 188 218 - -
Bda02g00925 677 Gene3D Transferase(Phosphotransferase) domain 1 448 670 - -
Bda02g00925 677 MobiDBLite consensus disorder prediction 191 210 - -
Bda02g00925 677 PANTHER OS01G0253100 PROTEIN 1 672 IPR045271 GO:0004714|GO:0006468
Bda02g00925 677 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 1 672 - -
Bda02g00925 677 ProSiteProfiles Leucine-rich repeat profile. 135 157 IPR001611 GO:0005515
Bda02g00925 677 Gene3D Ribonuclease Inhibitor 1 195 IPR032675 -
Bda02g00925 677 CDD STKc_IRAK 374 646 - -
Bda02g00925 677 Pfam Leucine rich repeat N-terminal domain 2 31 IPR013210 -
Bda02g00925 677 SUPERFAMILY Protein kinase-like (PK-like) 347 643 IPR011009 -
Bda02g00925 677 Pfam Protein kinase domain 369 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda02g00925 677 Gene3D Phosphorylase Kinase; domain 1 333 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00925 - - - tcc:18597218 852.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00925 Bda-Chr2:49467885 Bda13g00653 Bda-Chr13:7491609 6.03E-126 dispersed
Bda02g00925 Bda-Chr2:49467885 Bda09g01596 Bda-Chr9:47377168 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda06g00321 . 24 694 Strubbelig Receptor Gene Family AT4G03390 55.8 5.5e-182 634.8
Bda13g00653 . 21 566 Strubbelig Receptor Gene Family AT4G03390 59.1 4.1e-169 592.0
Bda07g01009 . 17 707 Strubbelig Receptor Gene Family AT4G03390 54.5 2.3e-164 576.2
Bda03g01600 . 3 512 Strubbelig Receptor Gene Family AT5G06820 51.7 1.9e-131 466.8
Bda09g01596 . 407 700 Strubbelig Receptor Gene Family AT1G11130 54.2 5.0e-86 315.8
Bda02g00925 . 353 647 Strubbelig Receptor Gene Family AT1G11130 51.2 1.9e-80 297.4
Bda03g01600 . 3 512 Strubbelig Receptor Gene Family AT5G06820 51.7 1.9e-131 466.8
Bda06g00321 . 24 694 Strubbelig Receptor Gene Family AT4G03390 55.8 5.5e-182 634.8
Bda13g00653 . 21 566 Strubbelig Receptor Gene Family AT4G03390 59.1 4.1e-169 592.0
Bda07g01009 . 17 707 Strubbelig Receptor Gene Family AT4G03390 54.5 2.3e-164 576.2
Bda09g01596 . 50 723 Strubbelig Receptor Gene Family AT1G53730 51.5 1.1e-144 510.8
Bda09g01596 . 226 730 Strubbelig Receptor Gene Family AT4G22130 69.7 2.1e-175 612.5
Bda02g00925 . 136 677 Strubbelig Receptor Gene Family AT4G22130 59.6 1.6e-162 569.7
Bda13g00653 . 255 560 Strubbelig Receptor Gene Family AT4G22130 58.0 7.2e-99 358.2
Bda07g01009 . 431 707 Strubbelig Receptor Gene Family AT4G22130 59.0 4.0e-89 325.9
Bda06g00321 . 429 686 Strubbelig Receptor Gene Family AT4G22130 59.8 1.8e-86 317.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004508 2 2 2 1 0 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 1 1 0 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69518 PF00069 Pkinase 1.40E-40 CL0016 Bda PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda02g00925 Bda_Chr02 FPKM 0.0 0.0 0.0 0.0 0.443815 0.0 0.372432 0.220762 0.228044