Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda02g00927 ATGTTTGGCGACTTCCATTTTCCTATTAAACTCCGTCTCCCACGAGAACAAGCTCACCCGCCTTCGGATGATAATCGGATGGTTGTCGATGAGCACGACTTCTTCTCCGTTAAGACAAGCGTCGCTGAACACCACGAACCACGTGGTAATTCTTGCAAACCCACCGGAGTTACCGTGAAAAGAGAACAGTGCAACTTTGAGCCGCCGCGGTCCGACTTGGCTGTAAATACTGGATTGCACCTGCTAATTGCCAACACTGGAAGCGATCAGTCAGCGGTGGACGATGGGATCTCATCGGAAGGCGGTCATGTCCACGAGCAAGATAAGAATGAGCTGCTTCAATTGCAAGGGGAACTTGGTCGAATGAACGAGGAGAATTATAAATTGAGAGAAATGCTCACCCAGCTCAACAACGACTACAATGCTCTGCAGATGCATCTTTTGGCGGTAAGGCAACAGCAACAAACCAATCACCCATCTGCAATTACTCAACTACAGGCAACAACAAATAATTTGCTTATTCTCAAACTATATGGGTTTCAATTATTCACAAGCCAACATGTTCTGGTGGGAAGAGGGATGGTGCAAAAGCAGTTCATGGATCTTGGACCCAGTGCGGTGGATGATCAAATATCCCAGTCTTCATCTGATGAAAGAACAGTTTCTGGGTCGTCTTTGAATCAAGCAGACGGTGGCGGGTTAAAGAAAACCATAAATGATATTAATTCATTAGATAAGGAACAGTCTAATGTGAGGGCTGAGAAAAGAAGGGAAGACGGCCCTGACTCAGATGGTAATGGTCCTAGTAAATCGAACTCTGTCAAACCTCTTGACCACCCGACGACGACGGAGGCCACCATGAGGAAAGCCCGCGTCTCTGTTCGAGCTCGATCAGAAGCGCCAATGATCAACGACGGATGCCAATGGAGAAAGTATGGGCAAAAGATGGCCAAAGGAAACCCATGTCCTCGGGCTTATTATAGATGCACCATGGCAGTTGGATGTCCAGTTCGCAAACAAGTTCAACGATGCGCTGAAGATCGAACAATTTTGATAACTACGTATGAAGGGAAACATAATCACCCTCTCCCACCAGCTGCTGTCGCTTTGGCTTCCACCACAACTGCCGCTGCTACCATGCTATTATCTGGGTCGATCCCAAGCGCAGATGGCTTAATGAACCAGAATTTGCTGGCAAGGGCCATTCTTCCTTGCTCATCAAACATGGCAACAATTTCAGCTTCTGCTCCATTTCCGACTGTCACCTTGGACCTCACTCACACACCAAACAACCCATTGCATGAATTCGAAAGACCTCCCACCACCCAGATCCATCTCCCATTTCTGGGTCATCCCCATCAGCTTCCTCCTCAGGTTTTTGGTCAAACGCTGTATAATCAATCAAAGCTCTCGGGTCTTCAGCTCTCCGGCCATGGAATCGGTTCTTCTCATTTATTCCAGCAAGCTCTACCGCCTTTATTGCACCAGGCTCACCCACCATCTTCGTTTCCCGACTCATTGAGTGCTGCCACTGCTGCCATCGCCTCTGATCCTAACTTCACCGCCGCTCTTGCCGCGGCCATAAGCTCCATCATCGGCGGCGCTCCGTCGAACACTGAAAACGCCAATGTCTCTCCAAGCAATAACAACATTAACAAAGTGAATAGTTAG 1671 48.29 MFGDFHFPIKLRLPREQAHPPSDDNRMVVDEHDFFSVKTSVAEHHEPRGNSCKPTGVTVKREQCNFEPPRSDLAVNTGLHLLIANTGSDQSAVDDGISSEGGHVHEQDKNELLQLQGELGRMNEENYKLREMLTQLNNDYNALQMHLLAVRQQQQTNHPSAITQLQATTNNLLILKLYGFQLFTSQHVLVGRGMVQKQFMDLGPSAVDDQISQSSSDERTVSGSSLNQADGGGLKKTINDINSLDKEQSNVRAEKRREDGPDSDGNGPSKSNSVKPLDHPTTTEATMRKARVSVRARSEAPMINDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGKHNHPLPPAAVALASTTTAAATMLLSGSIPSADGLMNQNLLARAILPCSSNMATISASAPFPTVTLDLTHTPNNPLHEFERPPTTQIHLPFLGHPHQLPPQVFGQTLYNQSKLSGLQLSGHGIGSSHLFQQALPPLLHQAHPPSSFPDSLSAATAAIASDPNFTAALAAAISSIIGGAPSNTENANVSPSNNNINKVNS 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 49474415 49476479 - Bda006372.1 Bda02g00927 3222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda02g00927 556 SUPERFAMILY WRKY DNA-binding domain 296 364 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda02g00927 556 Pfam WRKY DNA -binding domain 304 362 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda02g00927 556 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 542 IPR044810 GO:0003700
Bda02g00927 556 MobiDBLite consensus disorder prediction 265 280 - -
Bda02g00927 556 Gene3D WRKY domain 288 365 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda02g00927 556 SMART WRKY_cls 303 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda02g00927 556 MobiDBLite consensus disorder prediction 247 264 - -
Bda02g00927 556 MobiDBLite consensus disorder prediction 206 290 - -
Bda02g00927 556 Coils Coil 105 139 - -
Bda02g00927 556 ProSiteProfiles WRKY domain profile. 298 364 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda02g00927 556 PANTHER WRKY TRANSCRIPTION FACTOR 6 5 542 - -
Bda02g00927 556 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00927 Bda-Chr2:49474415 Bda15g00953 Bda-Chr15:17560389 1.78E-137 dispersed
Bda02g00927 Bda-Chr2:49474415 Bda15g00959 Bda-Chr15:17679033 1.29E-138 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15597 PF03106 WRKY 5.20E-24 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda02g00927 - - tcc:18597191 495.738