Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00013 ATGGCTTCAGCTGTAGTTAACTGCCCCAGTAATGTCAGCATAATCAAGGGATTAGATTGTCTTACCTACGTGGGTCTTAAACCCTTGGCAAATCCAAAGTTCAACTGCGTGCAACTCTCCGTCAAATCTCGTCCGACTCGTGCCTTTGTTGTTCGAGCAAGCGAGGCACGCGATGGACAGGTGAAGAAGCTTGGACTAAGTGATGCGGAGTGTGAAGCTGCTGTTGCAGCTGGAAATGTGCCTCAAGCACCCCCAGTGCCGCCTAAACCAGCGGCACCTGCTGGAACTCCTGTCGTATCTTCACTTCCTCTCAGCCGCCGTCCTCGTCGAAATCGAAAATCACCAGCATTGAGGTCATCATTCCAGGAGACGAACATATCACCTTCCAATTTTGTCTATCCCCTTTTCATTCATGAAGGTGAGGAGGATACGCCGATTGGAGCTATGCCCGGATGTTATAGACTTGGGTGGAGACATGGACTAGTGGAAGAGGTCGCCAAGGCCCGTGATGTTGGAGTTAATAGCATTGTGCTCTTCCCAAAAATTCCAGATGCTTTGAAGACTCCCACAGGGGATGAAGCATATAATGACAATGGCCTTGTTCCTCGATCAATTCGTCTGCTCAAAGACAAATTCCCTGATCTTGTGATTTACACTGACGTTGCATTAGATCCATATTCATCAGATGGTCACGATGGTATTGTTAGAGAAGATGGAGTTATAATGAATGATGAGACAGTGCATCAATTATGTAAACAAGCTGTTTCCCAGGCCCGAGCAGGTGCTGATGTTGTTAGTCCGAGTGACATGATGGACGGTCGAGTTGGAGCAATTCGATCAGCTCTTGATGCTGAAGGCTTCCATGACGTCTCTATCATGTCCTATACAGCAAAGTATGCAAGTTCATTTTATGGTCCGTTTCGAGAAGCTCTCGACTCAAATCCACGTTTTGGAGACAAAAAGACTTATCAGATGAACCCAGCAAATTACAGGGAGGCTTTGATTGAGGTTCGAGAGGATGAAGCAGAAGGAGCAGATATCCTTTTGGTGAAACCTGGTCTCCCTTATTTGGATATCATTAGGCTTCTCAGGGATAGCTCTTCTCTGCCAATTGCAGCATATCAGGTGTCGGGAGAATATTCAATGATAAAGGCAGGTGCTGTTCTGAAAATGATTGACGAAGAAAAGGTTATGATGGAGTCTCTTTTGTGTCTCCGACGCGCGGGTGCCGATGTCATCCTCACCTACTTTGCCTTGCAGGCTGCCAGATGTTTATGCGGGGAGAAGAGGTAG 1293 47.02 MASAVVNCPSNVSIIKGLDCLTYVGLKPLANPKFNCVQLSVKSRPTRAFVVRASEARDGQVKKLGLSDAECEAAVAAGNVPQAPPVPPKPAAPAGTPVVSSLPLSRRPRRNRKSPALRSSFQETNISPSNFVYPLFIHEGEEDTPIGAMPGCYRLGWRHGLVEEVAKARDVGVNSIVLFPKIPDALKTPTGDEAYNDNGLVPRSIRLLKDKFPDLVIYTDVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVSQARAGADVVSPSDMMDGRVGAIRSALDAEGFHDVSIMSYTAKYASSFYGPFREALDSNPRFGDKKTYQMNPANYREALIEVREDEAEGADILLVKPGLPYLDIIRLLRDSSSLPIAAYQVSGEYSMIKAGAVLKMIDEEKVMMESLLCLRRAGADVILTYFALQAARCLCGEKR 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 334027 338108 - Bda015946.1 Bda03g00013 3272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00013 430 Gene3D Aldolase class I 95 430 IPR013785 -
Bda03g00013 430 MobiDBLite consensus disorder prediction 80 120 - -
Bda03g00013 430 CDD ALAD_PBGS_aspartate_rich 106 426 - -
Bda03g00013 430 Pfam Delta-aminolevulinic acid dehydratase 106 423 IPR001731 GO:0004655|GO:0033014|GO:0046872
Bda03g00013 430 PRINTS Delta-aminolevulinic acid dehydratase signature 399 418 IPR001731 GO:0004655|GO:0033014|GO:0046872
Bda03g00013 430 PRINTS Delta-aminolevulinic acid dehydratase signature 344 360 IPR001731 GO:0004655|GO:0033014|GO:0046872
Bda03g00013 430 PRINTS Delta-aminolevulinic acid dehydratase signature 292 311 IPR001731 GO:0004655|GO:0033014|GO:0046872
Bda03g00013 430 PRINTS Delta-aminolevulinic acid dehydratase signature 223 237 IPR001731 GO:0004655|GO:0033014|GO:0046872
Bda03g00013 430 PRINTS Delta-aminolevulinic acid dehydratase signature 254 273 IPR001731 GO:0004655|GO:0033014|GO:0046872
Bda03g00013 430 PRINTS Delta-aminolevulinic acid dehydratase signature 369 384 IPR001731 GO:0004655|GO:0033014|GO:0046872
Bda03g00013 430 PANTHER DELTA-AMINOLEVULINIC ACID DEHYDRATASE 2, CHLOROPLASTIC-RELATED 81 429 - -
Bda03g00013 430 ProSitePatterns Delta-aminolevulinic acid dehydratase active site. 344 356 IPR030656 -
Bda03g00013 430 PANTHER DELTA-AMINOLEVULINIC ACID DEHYDRATASE 81 429 IPR001731 GO:0004655|GO:0033014|GO:0046872
Bda03g00013 430 SUPERFAMILY Aldolase 102 426 - -
Bda03g00013 430 SMART ALAD_2 103 425 IPR001731 GO:0004655|GO:0033014|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00013 K01698 hemB, ALAD; porphobilinogen synthase [EC:4.2.1.24] - vvi:100264314 696.812
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g252 . . . Bda03g00013 . Bpe04g00007 Bma04g00012 . Cmo04g02479 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g02295 . Cpe01g02056 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009710 1 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 3 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00013 Bda_Chr03 FPKM 35.9851 42.26297 58.70396 56.886761 43.925571 39.305519 39.479679 51.707626 52.545853