Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00014 ATGGCGGACCAATATGTCTTCGATGCCCACGCCGCTTCCCACTTGCACAACCACCTCAGACTCACCTTCGCTTCCGGCAAGACCAAGACTTATCAATGGAGAATATCGCAGTTGAAATCTCTCCTCAAACTTTGCGACGACCGCGAGCAGGATATCGCCGATGCTCTTCGCTCCGACCTTTCCAAGCCCGATGTCGAATCTCTCGTTTATGAGGTAGCTATGCTGAAGAATTCATGTAGAAATGCGCTGGCCCAACTCAAGCACTGGGTCATACCTGAAAAGGCTAAAACATCAATTACCACATTTCCTTCTTCAGCTGAAATTGTATCAGAACCTCTGGGTGTTGTGCTAATTATATCAGCCTGGAATTATCCTTTCTTGTTGTCACTTGATCCATTAATTGGAGCTATTGCTGCGGGTAATGCTGTGGTTTTGAAGCCATCAGAAATCTCTCCTGCAACGTCATCTTTACTTGCAAAACTATTAGGTGAATATCTGGATAACTCTTCTATAAAGGTCGTGGAAGGAGCTGTTTCTGAAACTTCAGCTTTGTTGGAACAGAAGTGGGACAAAATATGCTATACAGGCAACGGTAGAGTGGGACGCATCATAATGACTGCTGCTGCGAAGCATCTTACACCAGTACTTTTGGAGCTGGGAGGAAAATCGCCTGTTGTTGTCGATTCAGGCATTAGTTTAAAGGTGGCAACTAGACGAATAATTGCTGGTAAGTGGGGATGTAATAATGGACAAGCATGTATCTCTCCAGACTACATCATAACTACAAAAGATTTTGCTCCTAAGTTGATAGAATCTCTAAAGCAAGAATTAGAAAAGTTCTACGGGAAGAATCCGTTGGAATCAAAGGAATTATCCCGGATTGTAAACATCAATCACTTTACTCGCTTATCAAAGATCATGGATGAAGAGAATGTTTCAGACAAGATTATCTTTGGAGGTGAAAGAGACAAATCCAACTTAAGGATTGCTCCTACCATCTTGCTGGACGTCCCTCGAGACTCTTTGATCATGACTGAGGAAATTTTTGGTCCGTTGCTTCCCATTCTTACGGTTGACAAAGTGGAAGACAGTTTGGATATAATAAACTCTGGTCCAAAGCCACTTGCGGCGTACATATTCACAAACAACAAGAAGCTCAAGGAGCAATTCGTGTCATCTGTCTCGGCGGGGGGTTTGGTTATCAACGACACAACTATACATCTTGCAGTTCACAGCCTACCATTTGGAGGAGTGGGAGATAGTGGAATAGGTGCATACCATGGGAAATTTTCTTTCGATGCTTTTAGCCATAAGAAAGCAGTCATCTATCGAGGATTCGCAGGTGATGCTTCAATGAGGTACCCGCCATTCACTTCTGGAAAGTTGAGAATTCTCAAGGCTCTTGTTGGTGGTAGTTTATGGGGCGTTATCCGTGCTCTTTTCGGGTGGTCTTGA 1455 43.78 MADQYVFDAHAASHLHNHLRLTFASGKTKTYQWRISQLKSLLKLCDDREQDIADALRSDLSKPDVESLVYEVAMLKNSCRNALAQLKHWVIPEKAKTSITTFPSSAEIVSEPLGVVLIISAWNYPFLLSLDPLIGAIAAGNAVVLKPSEISPATSSLLAKLLGEYLDNSSIKVVEGAVSETSALLEQKWDKICYTGNGRVGRIIMTAAAKHLTPVLLELGGKSPVVVDSGISLKVATRRIIAGKWGCNNGQACISPDYIITTKDFAPKLIESLKQELEKFYGKNPLESKELSRIVNINHFTRLSKIMDEENVSDKIIFGGERDKSNLRIAPTILLDVPRDSLIMTEEIFGPLLPILTVDKVEDSLDIINSGPKPLAAYIFTNNKKLKEQFVSSVSAGGLVINDTTIHLAVHSLPFGGVGDSGIGAYHGKFSFDAFSHKKAVIYRGFAGDASMRYPPFTSGKLRILKALVGGSLWGVIRALFGWS 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 343996 347725 + Bda015947.1 Bda03g00014 3273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00014 484 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 217 224 IPR029510 GO:0016491
Bda03g00014 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 439 IPR016162 GO:0016491
Bda03g00014 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 221 421 IPR016163 GO:0016620
Bda03g00014 484 PIRSF ALDH 2 478 IPR012394 GO:0006081
Bda03g00014 484 PANTHER ALDEHYDE DEHYDROGENASE 4 484 IPR012394 GO:0006081
Bda03g00014 484 Pfam Aldehyde dehydrogenase family 29 441 IPR015590 GO:0016491
Bda03g00014 484 PANTHER ALDEHYDE DEHYDROGENASE 4 484 - -
Bda03g00014 484 SUPERFAMILY ALDH-like 18 446 IPR016161 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00014 K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] - twl:120017045 784.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00014 Bda-Chr3:343996 Bda11g01389 Bda-Chr11:17414737 0 dispersed
Bda03g00014 Bda-Chr3:343996 Bda06g00234 Bda-Chr6:4124204 3.60E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g247 . Blo12g01125 . Bda03g00014 . Bpe04g00009 Bma04g00013 . . . Cma01g01383 Cma09g00785 . . . Cpe06g00619 . . . . . . . . . . . . . . . Cone4ag1417 Cone7ag1521 . . Lsi04g02401 Csa04g01789 . . . . . . . . . . . Cmo01g01433 Cmo09g00776 . . . Car09g00694 . Cpe02g00556 Bhi09g02693 . . . Hepe01g2295 Mch11g0839 . Cla11g01542 Cam11g1605 Cec11g1633 Cco11g1636 Clacu11g1762 Cmu11g1578 Cre11g1996 . . Chy07g00628 Cme07g00835
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00121 . 1 504 Aldehyde Dehydrogenase Gene Family AT3G24503 68.3 7.4e-204 706.8
Bda01g01881 CCT 3 464 Aldehyde Dehydrogenase Gene Family AT3G24503 68.3 2.4e-186 648.7
Bda11g01261 . 34 536 Aldehyde Dehydrogenase Gene Family AT3G24503 53.0 7.5e-156 547.4
Bda01g02225 . 30 470 Aldehyde Dehydrogenase Gene Family AT3G24503 55.4 1.7e-139 493.0
Bda11g01261 . 1 536 Aldehyde Dehydrogenase Gene Family AT3G48000 77.4 8.1e-249 856.3
Bda01g02225 . 1 470 Aldehyde Dehydrogenase Gene Family AT3G48000 77.6 3.3e-218 754.6
Bda11g00121 . 20 504 Aldehyde Dehydrogenase Gene Family AT3G48000 54.0 4.1e-160 561.6
Bda01g01881 CCT 3 464 Aldehyde Dehydrogenase Gene Family AT3G48000 53.5 2.8e-148 522.3
Bda01g02225 . 1 375 Aldehyde Dehydrogenase Gene Family AT1G23800 78.6 2.9e-174 608.2
Bda11g01261 . 1 380 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 4.3e-170 594.3
Bda11g00121 . 20 348 Aldehyde Dehydrogenase Gene Family AT1G23800 55.3 3.0e-102 369.0
Bda01g01881 CCT 3 308 Aldehyde Dehydrogenase Gene Family AT1G23800 55.9 4.7e-92 335.1
Bda11g01389 . 49 558 Aldehyde Dehydrogenase Gene Family AT4G34240 67.8 3.8e-198 688.0
Bda03g00014 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 62.8 3.7e-177 618.2
Bda03g00014 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.5 1.4e-179 625.9
Bda11g01389 . 145 554 Aldehyde Dehydrogenase Gene Family AT1G44170 67.6 1.1e-160 563.1
Bda02g00634 . 67 497 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 1.4e-115 413.3
Bda11g01847 . 1 501 Aldehyde Dehydrogenase Gene Family AT4G36250 61.2 1.6e-184 642.5
Bda02g00634 . 1 499 Aldehyde Dehydrogenase Gene Family AT4G36250 54.4 1.1e-161 566.6
Bda06g00234 . 1 530 Aldehyde Dehydrogenase Gene Family AT1G79440 77.5 1.5e-236 815.5
Bda06g00225 . 1 530 Aldehyde Dehydrogenase Gene Family AT1G79440 77.4 4.5e-236 813.9
Bda06g01109 . 2 484 Aldehyde Dehydrogenase Gene Family AT1G79440 74.9 8.8e-216 746.5
Bda15g00480 . 12 503 Aldehyde Dehydrogenase Gene Family AT2G14170 81.1 9.9e-232 799.7
Bda06g00575 . 1 520 Aldehyde Dehydrogenase Gene Family AT1G74920 77.9 1.9e-244 841.6
Bda06g00575 . 1 522 Aldehyde Dehydrogenase Gene Family AT3G48170 75.9 6.0e-246 846.7
Bda11g00046 . 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 88.9 3.7e-264 907.1
Bda13g01096 . 17 275 Aldehyde Dehydrogenase Gene Family AT2G24270 75.1 2.9e-115 412.5
Bda11g01689 . 1 554 Aldehyde Dehydrogenase Gene Family AT5G62530 79.5 8.3e-273 936.0
Bda03g01176 . 4 588 Aldehyde Dehydrogenase Gene Family AT3G66658 80.2 3.5e-285 977.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00014 Bda_Chr03 FPKM 1.740365 2.174488 4.524547 3.573452 20.221107 20.398481 22.245617 4.92302 4.993796