Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00015 TCAGGCTCTCGCGGCAAGTGGAAAAAGCGGAAGGCCGAATCTCTATCCACACGCAGAAACAACCATGCCACCTTGAACGCCATTAACAACAACAATAACAACAACAACAACAAGCCCGAAGACGAAGACGATGATGATGACCTACCTGCTCCTGATAATGACGAACTTGACAACATTGACGACTCCGACGACCCTCTGCTTCACCCTAACCCCCAATCCGCCTCCACACTCTTGCCTAACAACTCTCACGAGACTGAGGTATTATCCCATGATGGAGTCCGCATTTCTGAGTTCCCATTGGCTGTCAGGCGCTCTGTGAGTCGGCCCCACTCCTCCGTGCTGGGGATTGTGGCTTTGGAGAGAGCCCATCAGTTTGGAGAGAGTAAGGTACAGTCCAGTAATTCTTGGGTTTTGGAAAACGTCTCCTATGGTCAGCTCCAGGCACTATCTGCTGTCCCCGCCGATAGTCCAGCCTTGCTGGATCAGGACAGAGCAGAGTCCTCCAATTCTTCTTACGTGGTGACTCCACCATCGATTATGGAAGGCGAGGGTGTGGTTAAGCGGTTTGGAAACAGGGCTCATGTCGTTCCCATGCAGTCAGATTGGTTTTCTCCAGCCATGGTACATCGATTGGAAAGACAAGTGGTCCCACATTTTTTCTCAGGGAAATCTTCTGATCATACTCCTGAGAAATACATGGAATGTAGAAATTACATTGTTGCAAAATACATGGAGAATCCAGACACGAGACTTACAGTTTCTGATTGCCACAGATTGAATGTTGGTGTTGTTAATGACGATTTAACTCGAATTTTTAAATTTCTTGATAATTGGGGAATTATTAACTATTCTGCTAGAGAACCAAGTCATGATCCTCAGTATGGTAATTCCTTCCTTAAGGAGGATCTAAATGGTGAGATTCATGTGCCATCAGCTGCTTTGAAATCAGTTGACAGTTTAATCAAATTTGACAAGCCTAAATGTCGGCTTAAGGTCGCTGATGTATATTCATCATTATCATGCCACAATGATGATATCTTCGATCTGGATAGCAAAATTCGAGACCATCTTTCAGAAAATCAATGTCATTCTTGCTCTCGGACTCTTCCTATCATATCCTATCAGTCGCAGAAGGATGTGGATGTCCTATTATGTTCTGATTGCTTCCATGAGGGGAAACACGTCACTGGTCATTCAAGCATAGATTTTTCACTTGTTGATTTAACAAAAGATTACGGTGACCTAGATGGTGAAAGTTGGACGGATCAAGAAACCTTATTACTCTTAGAAGCAATAGAGATATATAATGAGAATTGGAATGAAATAGCAGAGCATGTTGGGTCCAAGTCTAAAGCACAATGCATTCTTCATTTTCTACGTCTGCCAATTGAGGACCGCCTTCTGGAAAATGTTGAAGTTCCAGGTGCTTCCTTTTCAAACAATTCATCAAGTGGAGATTTTTGTGGAAGGCCTCATTCAAACACAAATGGAGATGTTGCAGGAAATTGTCATCGCGATTTTGACTTTGAGAGCAGACTCCCCTTTGCTAATTCTGGTAACCCAGTCATGGCCTTGGTATGTTTCTGTTGGAAAAATCTCCAGGTTGCATTCCTGGCATCTGCAGTTGGACCAAGAGTTGCTGCAGCCTGTGCTCACGCTTCTCTCGCTGCATTGTCTGAAGATAATGATTCATCAGCTTCGGGGCACAGTAATAAGATGACTTTAGAGAGTGGCCATGTCAAGGAAGGTGGTACTACCCGAGATTTTCCCAGTTTAGTTAAGCAAAAAGGTGAAAACGATGTAGAGCTCGAGCTTACTTCGTTGTCTGAACAAAAGGTGAAAGCTGCTGCTTCAGCCGGCCTTGCTGCTGCAGCAACAAAGGCGAAATTATTTGCCGATCATGAAGAAAGAGAAATACAGAGATTGTCTGCCAATATTATAAACCATCAGTTGAAGAGATTGGAGTTGAAGTTGAAGCAATTTGCGGAAATAGAAACCTTTTTGATGAAGGAATGTGAACATGTAGAAAGGACGAGGCAGAGGTTTATTGGGGAGCGGACAAGAATGCTATCCGTCCCGTACGGACCTAGTGGTGCCATTTCACCCATGACTCCACCAAACGCTGGTCCTTCCGTAGCTAGCAGTAGTGCCACAAACATTAGGCAACAGATTGTCTCAGCTCCACCGTCACAGCCAGGCGTTTCAGGATACGCAAACAATCAACCAGTTCATCCCCACATGCCATACATGCCACGCCAGCCATTGTTTGGTTTAGGGCCGAGGCTGCCCTTGTCTGCCATACAGCCCTCATCAGCTCCTCCAAACGCCATGTTTAATGGCCCTGGTAGTTCCCAGAGGCCTGTAACAGGAACTACCTCTGGATTAGGTTGA 2391 45.13 SGSRGKWKKRKAESLSTRRNNHATLNAINNNNNNNNNKPEDEDDDDDLPAPDNDELDNIDDSDDPLLHPNPQSASTLLPNNSHETEVLSHDGVRISEFPLAVRRSVSRPHSSVLGIVALERAHQFGESKVQSSNSWVLENVSYGQLQALSAVPADSPALLDQDRAESSNSSYVVTPPSIMEGEGVVKRFGNRAHVVPMQSDWFSPAMVHRLERQVVPHFFSGKSSDHTPEKYMECRNYIVAKYMENPDTRLTVSDCHRLNVGVVNDDLTRIFKFLDNWGIINYSAREPSHDPQYGNSFLKEDLNGEIHVPSAALKSVDSLIKFDKPKCRLKVADVYSSLSCHNDDIFDLDSKIRDHLSENQCHSCSRTLPIISYQSQKDVDVLLCSDCFHEGKHVTGHSSIDFSLVDLTKDYGDLDGESWTDQETLLLLEAIEIYNENWNEIAEHVGSKSKAQCILHFLRLPIEDRLLENVEVPGASFSNNSSSGDFCGRPHSNTNGDVAGNCHRDFDFESRLPFANSGNPVMALVCFCWKNLQVAFLASAVGPRVAAACAHASLAALSEDNDSSASGHSNKMTLESGHVKEGGTTRDFPSLVKQKGENDVELELTSLSEQKVKAAASAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEIETFLMKECEHVERTRQRFIGERTRMLSVPYGPSGAISPMTPPNAGPSVASSSATNIRQQIVSAPPSQPGVSGYANNQPVHPHMPYMPRQPLFGLGPRLPLSAIQPSSAPPNAMFNGPGSSQRPVTGTTSGLG 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 368445 374494 + Bda015948.1 Bda03g00015 3274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00015 796 Coils Coil 632 652 - -
Bda03g00015 796 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 75 785 - -
Bda03g00015 796 MobiDBLite consensus disorder prediction 561 593 - -
Bda03g00015 796 Pfam SWIRM-associated region 1 619 689 IPR032451 -
Bda03g00015 796 ProSiteProfiles Myb-like domain profile. 419 462 IPR001005 -
Bda03g00015 796 SUPERFAMILY Homeodomain-like 193 291 IPR009057 -
Bda03g00015 796 MobiDBLite consensus disorder prediction 768 796 - -
Bda03g00015 796 MobiDBLite consensus disorder prediction 1 80 - -
Bda03g00015 796 MobiDBLite consensus disorder prediction 18 36 - -
Bda03g00015 796 SMART sant 416 464 IPR001005 -
Bda03g00015 796 PANTHER SWI/SNF COMPLEX-RELATED 75 785 - -
Bda03g00015 796 MobiDBLite consensus disorder prediction 760 796 - -
Bda03g00015 796 CDD SANT 419 461 IPR001005 -
Bda03g00015 796 SUPERFAMILY Homeodomain-like 417 468 IPR009057 -
Bda03g00015 796 Pfam SWIRM domain 197 283 IPR007526 GO:0005515
Bda03g00015 796 Pfam Myb-like DNA-binding domain 419 461 IPR001005 -
Bda03g00015 796 Gene3D - 200 287 IPR036388 -
Bda03g00015 796 MobiDBLite consensus disorder prediction 1 17 - -
Bda03g00015 796 MobiDBLite consensus disorder prediction 39 61 - -
Bda03g00015 796 Gene3D - 416 466 - -
Bda03g00015 796 ProSiteProfiles SWIRM domain profile. 194 292 IPR007526 GO:0005515
Bda03g00015 796 ProSiteProfiles SANT domain profile. 415 466 IPR017884 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00015 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101220514 958.362
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00015 Bda-Chr3:368445 Bda14g00547 Bda-Chr14:4006287 1.24E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00015 Bda_Chr03 FPKM 78.626137 78.867035 21.396143 22.671341 105.693802 110.311401 99.924698 3.478629 4.162905