Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00016 ATGGCGCCCTTGTTGCAATCCTCTCAGCCATGGGTGGAGAAATATCGACCTAGGCAAGTCAAAGATGTGGCGCACCAGGACGAGGTGGTCCGTGTTCTTACCAACACCCTCCAAACTACCCATTGCCCGCACATGCTCTTTTATGGTCCTCCTGGTACCGGAAAAACCACCACCGCTCTTGCGATTTCCCATCAACTTTTCGGACCAGAACTTTACAAGTCTAGAGTGTTGGAACTGAATGCAAGCGATGATCGTGGGATAAATGTCGTTCGAACTAAAATCAAAGACTTTGCTGCAGTCGCTGTAGGTTCTACCCATAATCAAGGGGGTTACCCTTGTCCCCCGTACAAGATAATTATCCTTGATGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCCTTGCGGCGAACGATGGAAACTTACTCTAAAGTTACAAGATTCTTTTTCATTTGTAATTACATCAGCAGGATAATAGAGCCGCTGGCCTCCAGGTGTGCAAAATTTAGGTTTAAGCCACTTACAGAAGCAATCATGAGCGATCGTGTACTACACATTTGCAAAGAAGAAGGTCTAAATCTGGATGAAGAGGCACTTTCAACCTTAAGTTCTATCTCACAAGGTGATCTTCGGAGGGCTATTACATTTTTGCAGTCAGCAGCACGCTTATTTGGATCATCAATCTCTTCACAAAATCTTATCAATGTGTCTGGGGTTCTCCCACAAGAGGTTGTTGGGGCTCTTTTTACAGCATGTAAAAGTGGCAACTTTGATTCAGCGAACAAAGAAGTCAATAATGCAATTGCTGATGGTTATCCAGCATCTCAGATGTTTTCGCAGCTATTTGAGATGGTTGTTGAAGCAGATGATATTCAAGATGAGCAGAAGGCAAAAATATGCAAGAAATTGGCAGAAGCAGATAAGTGTCTGGTTGATGGCGCAGATGAGTATTTGCAACTGCTGGACGTGGCAAGTATTGTGATGCAAACGCTCTCGGATATGCAACACTAA 1011 44.11 MAPLLQSSQPWVEKYRPRQVKDVAHQDEVVRVLTNTLQTTHCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSTHNQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEAIMSDRVLHICKEEGLNLDEEALSTLSSISQGDLRRAITFLQSAARLFGSSISSQNLINVSGVLPQEVVGALFTACKSGNFDSANKEVNNAIADGYPASQMFSQLFEMVVEADDIQDEQKAKICKKLAEADKCLVDGADEYLQLLDVASIVMQTLSDMQH 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 377462 380909 - Bda033471 Bda03g00016 3275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00016 336 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Bda03g00016 336 Gene3D - 176 239 - -
Bda03g00016 336 CDD HLD_clamp_RFC 174 233 - -
Bda03g00016 336 Pfam Replication factor C C-terminal domain 241 323 IPR013748 -
Bda03g00016 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 229 IPR027417 -
Bda03g00016 336 Gene3D - 3 173 IPR027417 -
Bda03g00016 336 SMART AAA_5 41 190 IPR003593 -
Bda03g00016 336 PANTHER REPLICATION FACTOR C SUBUNIT 4 7 330 - -
Bda03g00016 336 Gene3D - 240 330 - -
Bda03g00016 336 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 7 330 - -
Bda03g00016 336 CDD AAA 26 166 - -
Bda03g00016 336 SUPERFAMILY post-AAA+ oligomerization domain-like 241 329 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00016 Bda-Chr3:377462 Bda08g00530 Bda-Chr8:5300999 4.28E-61 dispersed
Bda13g00020 Bda-Chr13:368117 Bda03g00016 Bda-Chr3:377462 7.77E-08 dispersed
Bda03g00016 Bda-Chr3:377462 Bda13g01478 Bda-Chr13:37675193 3.81E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00016 K10755 - egr:104450918 589.726