Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00019 TTCTCTTTGGATGTCGGAGTGGAGTTGCAGATGGAGTTGCCGGAGTGCCCGGTTTGCCTGCAAAACTACGACGCCCACGACACAATTCCACGCGTACTCTCTTGCGGTCACTCTGCCTGCCACGCCTGCCTTCTTAACTTCCCTCAACGTTACTCCGGCACCATTCGCTGCCCCTCCTGTAACGTACTTGTCAAATACCCAATTCAAGGTCCCTCCGCTCTCCCCAAGAACATTGACCTCCTCAGAATCTCTCTTCCTCCCAACCCGACCACTGAAACTTCCACGAAGCCTATCAATCGATTACCCGCTGAGACCCATAATTTCCTTCCTCAGTTATGGTCTGACGAGTTTTACAAGAGCTGGAAGGATTGGGTCCTTCCCCATCACGCCATTTCATTCGACCCCGAAATTGAAGATCGAGGAGACGAAAAAGTGACGATGGGGAGAATTGGGTCTGTTTTGGGTTCAGATTACTCGTTGCCAGTTTGGGTGTCTGACAATCGAAGGGCGAGTCTTGCGCGGGTTGTCTCTTTTCCTCCCGTGGATATTCATTCAGTAATTAAATTCGGATATGTTGCTACTATTATGAAATGTTTAAGTGGCATGAATGACGGGAAGAGAAACGAACTGGGTTTGATGCTGAGAGCGGGTGTTAAGAGTTGTGGAAAAGTGTGTAAAGCTTTGGGATTGTGGGGTAATTTGGAAGATGGGTTTTTGTACCTCGTGTGTGAGAGACAAAAGGGGAACTTGATAGAAGAGGTTCGCAATCCGGAAAATGGATTTTGTGGAAGAGATGGGGTTGAATTGACTGAAAACGGGCTGCATGCATTTTCAATGATTGCTGTTGATATATGTGAAGCTCTGCTAGCTTTGCGCTCCATTGGGTTGAGTTTAGGCTTTTTGTGTTCTTCTTGTTTTGTTGTCGATCATTTTGGTCGCATTTGTATTGATTTAAATGAGGCTTTTGTGATGGGAAAGACAATTCGCAGGACTGTTATAGAGGCTGTTTTTGACAATACAATGAAAATTAATGAAAAATATTTGGGAGTCATTTTTAGTGCTTTAATTTCTCAAGAGATCTTTATCAGCCCAGAAGTCTTGGTCGATTTGTTGGAGAAAGAGGGCATGGTTGTAGAATGTGGCAGCAAAATGAGGTCAAACTGGCCAAGCTGCGATGTTTGGTCATTGGCTTGTGTTTTGCTTAGGCTTCTGATTGGAAGCAGTTGCTTTGAAAAGTTTCAAGGAATTGGGGAAGAAAATTGTTTTGATTTTTCTTCATTGTATACAAACTGGATGAAAAAAGCTAGTTCACTTTTAGAAACGAAGTTAGGTTCGGAAGGCATGTCACTGCTGGAGATCCTCTGCGGAAGTTTCAATTTTAATCCGGAAAGTCGTCCATCTCTAACATCCATCTGGAAATGCTTAAGAGAATTGATTATTCTACCAGAACTGGATATCGTGGATGGTGCGGAAGGAGCATTTAATGATGTTGTCATCGACCTTCGTTTGGTTCTCGGAGAACTTATCCGGCCATCTCAGGATTTTCGGAATAAAGAACACACAGAGTTTGAGCAAGTTGGCAAAGCTGGAAAAGATGTTATTGAAAGTCTGTCAGATGGAACGATTAAATGTAAAGATCTGCTTGGTCACCACGATTCTGTCTCTGGATTGGTTATTGGAGGCAAATTTCTGTTTAGCTCCTCGTATGATAAAACCATCCTTGTGTGGTCTTTGCAGGACTTTTCTCACGTACACACGTTTAAAGGTCACGAGCACAGAGTAGTGGGTGTGGTTTATGTGGATGGAGAGCGACCATTATGCGTAAGTGCTGATAACGGAGGTGGCATTTTTATATGGAGCATTAGTATGCCTCTTGAGCAAGGAGCATTAACGAAATGGTACGATGAGAAGGATTGGCGTTATAGTGGCATCCATGCATTGGCTTCTGCAGAAAATGGATATATTTATACAGGCGGAGGAGATAAATCTGTAAAAGCTTGGTTGTTGAAGGCAATTATCCCACTGATTTCTTGGTTGATGGGTATAAATTCAGCTTATGATCAAACCTTGTCTTGCACTATGAGTGGGCACAGGTCTGCAGTTTCTGCCCTTGCCGTATGCGAAGGGGTTCTATACAGCGGTAGCTGGGACGGGACTGTCCGATTATGGAGTCTTGCAGATCACAGTGCATTAACAGTTTTGGGGGAAGACTCGTGTGGAGCCTTGGCGTCTGTGTTGTCGCTCGCTGTTGATAGGAGCATTCTTATGTGGCGGAACGATGCATTTGTGAAAAGTGTGAAATCACACGAAGGAGCCATATTTTGTGCAGGGGTGTGGGGAAAGTGGGTGGTCACTGGAGGCTGGGATAAGAGCATTAATGTGCAGGAGTTTTCAGGCGAGATGGAGATGATAAGAATAGGATGCATCCCCGGTGTGTCTGTTGCATCGGCTTTGTTGTATTGGCAAGGAAGGCTTTTTGTTGGATATGCTGATAGATTCATAAAGGTATAG 2511 44.4 FSLDVGVELQMELPECPVCLQNYDAHDTIPRVLSCGHSACHACLLNFPQRYSGTIRCPSCNVLVKYPIQGPSALPKNIDLLRISLPPNPTTETSTKPINRLPAETHNFLPQLWSDEFYKSWKDWVLPHHAISFDPEIEDRGDEKVTMGRIGSVLGSDYSLPVWVSDNRRASLARVVSFPPVDIHSVIKFGYVATIMKCLSGMNDGKRNELGLMLRAGVKSCGKVCKALGLWGNLEDGFLYLVCERQKGNLIEEVRNPENGFCGRDGVELTENGLHAFSMIAVDICEALLALRSIGLSLGFLCSSCFVVDHFGRICIDLNEAFVMGKTIRRTVIEAVFDNTMKINEKYLGVIFSALISQEIFISPEVLVDLLEKEGMVVECGSKMRSNWPSCDVWSLACVLLRLLIGSSCFEKFQGIGEENCFDFSSLYTNWMKKASSLLETKLGSEGMSLLEILCGSFNFNPESRPSLTSIWKCLRELIILPELDIVDGAEGAFNDVVIDLRLVLGELIRPSQDFRNKEHTEFEQVGKAGKDVIESLSDGTIKCKDLLGHHDSVSGLVIGGKFLFSSSYDKTILVWSLQDFSHVHTFKGHEHRVVGVVYVDGERPLCVSADNGGGIFIWSISMPLEQGALTKWYDEKDWRYSGIHALASAENGYIYTGGGDKSVKAWLLKAIIPLISWLMGINSAYDQTLSCTMSGHRSAVSALAVCEGVLYSGSWDGTVRLWSLADHSALTVLGEDSCGALASVLSLAVDRSILMWRNDAFVKSVKSHEGAIFCAGVWGKWVVTGGWDKSINVQEFSGEMEMIRIGCIPGVSVASALLYWQGRLFVGYADRFIKV 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 387166 390059 + Bda015951.1 Bda03g00019 3278

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00019 836 Pfam RING-type zinc-finger 16 58 IPR027370 -
Bda03g00019 836 SUPERFAMILY WD40 repeat-like 545 835 IPR036322 GO:0005515
Bda03g00019 836 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 12 836 - -
Bda03g00019 836 PANTHER - 12 836 IPR044715 -
Bda03g00019 836 SUPERFAMILY RING/U-box 14 66 - -
Bda03g00019 836 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 694 725 - -
Bda03g00019 836 SMART ring_2 16 60 IPR001841 -
Bda03g00019 836 Gene3D - 681 831 IPR015943 GO:0005515
Bda03g00019 836 ProSiteProfiles Protein kinase domain profile. 139 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bda03g00019 836 Pfam WD domain, G-beta repeat 692 724 IPR001680 GO:0005515
Bda03g00019 836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 87 IPR013083 -
Bda03g00019 836 ProSiteProfiles Zinc finger RING-type profile. 16 61 IPR001841 -
Bda03g00019 836 Gene3D - 530 675 IPR015943 GO:0005515
Bda03g00019 836 SMART WD40_4 687 724 IPR001680 GO:0005515
Bda03g00019 836 SMART WD40_4 541 577 IPR001680 GO:0005515
Bda03g00019 836 SMART WD40_4 580 620 IPR001680 GO:0005515
Bda03g00019 836 SMART WD40_4 627 668 IPR001680 GO:0005515
Bda03g00019 836 SMART WD40_4 759 796 IPR001680 GO:0005515
Bda03g00019 836 SUPERFAMILY Protein kinase-like (PK-like) 234 479 IPR011009 -
Bda03g00019 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 694 733 IPR001680 GO:0005515
Bda03g00019 836 Gene3D Transferase(Phosphotransferase) domain 1 273 478 - -
Bda03g00019 836 ProSiteProfiles Trp-Asp (WD) repeats profile. 547 586 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00019 - - - mcha:111010782 867.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00019 Bda-Chr3:387166 Bda11g01675 Bda-Chr11:50905155 1.60E-07 dispersed
Bda11g01185 Bda-Chr11:12225329 Bda03g00019 Bda-Chr3:387166 6.15E-06 dispersed
Bda11g01311 Bda-Chr11:14197347 Bda03g00019 Bda-Chr3:387166 6.44E-06 dispersed
Bda03g00019 Bda-Chr3:387166 Bda07g01648 Bda-Chr7:30699517 1.19E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g220 . Blo12g01120 . Bda03g00019 . . Bma04g00018 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013185 1 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27