Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00020 ATGGCCACTGTTCCTGCTTCTCTTCTAAGCCCACCTTCCACCGCGGAGCCACTGTCTCGACGGAACATTCTAGCCTTCTCCATTTCCTCCCCCTTTTCGTTCTCACCGTTGTTTCGGCTGCGGTCTCGTCGTCTTGTGCTCTGCTCTACACCCACAGCCACAGCCATTCCTGTTACCGCGAGTTTGAAGGATAATCTGGGTCGTCTGAAAAGGTCCTGGGGTGACTTGACGAGATTGAATTTCTGGATCGTTCGTGATTACTACCGTCTTGTGAATGCCGTGAATGACTTTGAGCAGGAGATTCAAAATCTGACGGATGGGCAGCTCACTTCTAAGACGGAGGAGTTCCGCAGAAGACTACGACAGGGTGAAACTCTGGCTGACATTCAAGCTGAGGCTTTTGCTGTTGTTCGTGAAGCTGCAAAGAGGAGACTTGGCATGCGCCATTTTGACGTGCAGATTATTGGAGGAGCAGTACTCCATGATGGATCCATTGCAGAGATGAAAACGGGTGAAGGAAAAACATTGGTTTCCACTCTAGCTGCGTATCTTAACGCCTTAACTGGTGAAGGTGTTCATGTGGTAACTGTGAATGATTATCTAGCTCAAAGGGATGCTGAATGGATGGGTCTTGTCCACCGCTTTTTAGGTCTATCTGTGGGTCTTATACAGAGGGGGATGAAAGCTGAAGAACGAAGATCTAACTATAGGTGTGACATAACATATACCAACAATTCTGAACTTGGTTTTGATTATCTTCGAGATAACCTTGCTGCAAACAGTGTACAACTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCCATAGTTGATGAAGTTGATTCTGTTCTTATTGATGAAGGGAGAAATCCTTTGTTAATAAGTGGCGAGGCCAGTAAAGATGCTGCCCGATATCCAGTTGCTGCAAAAGTAGCTGAGCTGTTAGTGCAGGGTCTTCATTACAAAGTGGAGCTTAAAGATAACTCGGTTGAGTTAACAGAAGAGGGAATAACAATAGCAGAGATTGCCCTTGAAACAAGCGACTTATGGGATGAAAATGATCCATGGGCTAGATTTGTGATGAATGCGTTAAAGGCTAAAGAATTCTACCGCCGAGATGTTCAATACATTGTCAGGAATGGGAAGGCTCTTATAATAAATGAGCTAACGGGTAGAGTTGAGGAGAAAAGAAGATGGTCTGAAGGAATTCACCAGGCTGTAGAGGCCAAAGAAGGTTTGAAGATTGAGGCAGATTCGGTGGTTGTGGCACAAATCACATATCAATCATTATTCAAGCTTTATCCAAGGTTGTCAGGGATGACCGGAACTGCAAAAACTGAGGAGAAAGAGTTTCTAAAGATGTTTCAGGTGCCTGTCATTGAAGTTCCCACAAATCTCCCAAACATTCGCAAAGATTTGCCTATTCAGGCTTTTGCTACTGCTCGTGGAAAATGGGATCATGTTCGTGAAGAAGTTGAGTACATGTTCAGACAGGGACGTCCTGTTTTAGTTGGTAGCACTAGTGTTGAAAATTCTGAATACTTGTCTGATCTGCTGAAGGAACGAAAAATTCCCCACAATGTCTTAAATGCAAGACCAAAGTATGCTGCAAGGGAAGCTGAAACTGTTGCTCAAGCTGGAAGAAAGAAAGCCATTACTATTTCAACAAATATGGCTGGCAGAGGCACTGACATAATTCTAGGAGGAAATCCGAAAATGCTTGCAAAAGAAATCATAGAAGATAGCTTGCTTCCATTTTTGACAAAAGAAGTTCCCGATTCTGAAGTTGACAGTGAAGATGTTTCACAGAAGGTGATTATCTTTGTCTATGTTACGCTGAGAAGTTTTATTCTGATCAACATTATGCTGCAGGTACTATCCAAGGTAAAGGTCGGACCTTCATCATTGGCCTTGCTAGCAAAGACAAATATTATGGCTAAATATGTCAGCAAAAATGAAGGAAAAGCCTGGACGTACAAGGAGGCAAAATCTATAATTTCAGAGTCTGTAGAACTCAGTCAATCAATAAGTTTGGAAGAGTTAGAGAGGCTTGTTGGCCAACAGGCGGAGACATACCCTCTTGGCCCCACTATTGCACTTGCTTATCTGTCTGTTTTGAAGGATTGTGAAAGACACTGTTTGAGTGAAGGTGCAGAAGTGAAAAGGCTCGGAGGTCTTCATGTCATTGGAACGTCTTTGCACGAGTCCCGAAGAATAGATAACCAGCTTCGTGGGAGAGCTGGAAGACAAGGAGATCCTGGATCTACTCGATTTATGATCAGCTTACAAGATGAGATGTTTCAAAAGTTCAATTTTGATACCGAGTGGGCTGTGAGACTCATTTCAAAAATTACTAATGATGAAGATATACCTATTGAAGGCGATACCATTGTAAAACAGCTATTGGCCCTGCAAATCAATGCCGAAAAATATTTCTTTGGCATAAGAAAGAGCCTAGTTGAATTCGATGAAGTATTAGAGGTGCAGAGGAAACATGTATATGATCTTCGGCAGTCAATTTTGACTGGGGATAATGAAAGCTGTTCCCAGCATATATTCCAGTACATGCAGGCGGTGGTAGATGAAATAGTATTCAAATATGTACATCCAACGAAGCATCCCAGAAGCTGGGATCTGAGTAAACTGCTGAAGGAGTTCTTGACAATTGGAGGGAAACTATTGGATGGTGTATCCACTGAAATCACCGAGGAAGCTTTACTGAATGCACTTACGAGATCGCATCAAATGAAATTCACAGATATCAACAATGTTCTCCTTCCTGGTTTACCTCCACCTCCTAATGCCTTTAGAGGGATACGCAGGAAAAACTCTTCTTTAAAACGTTGGCTTGCCATCTGTTCTGATGATTTAATTCAAATTGGAATGTACAGAACAACTGCTAATGTTCTCCGCAAGTACCTTGGAGATTTACTCATTGCTTCATATTTGGATGTTATTCAAGGAAGCGGTTTCGATGATTTATATGTTAAGGAAGTGGAGGTCAGATTCTTTCTTCTAACCTTACCCCATTTTGATCTTCGGATGCAGAGAGCTGTCCTTGTGAAAACTTTAGATTGTTTCTGGAGGGATCATCTCATCAACATGAACAGACTTAGCTCGGCGGTAAATGTTAGAGGCTTTGGGCACAGAAATCCTCTCGAGGAATACAAGATTGATGGATGCAAATTCTTCATATCCATGCTTAGCGCGACCAGGAGGCTAACTGTGGAATCTCTCTTGGGCTATTGGTCATCCCCAATGGAGTCTCAAGAAATATTCATAGCATAA 3288 42.58 MATVPASLLSPPSTAEPLSRRNILAFSISSPFSFSPLFRLRSRRLVLCSTPTATAIPVTASLKDNLGRLKRSWGDLTRLNFWIVRDYYRLVNAVNDFEQEIQNLTDGQLTSKTEEFRRRLRQGETLADIQAEAFAVVREAAKRRLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGLVHRFLGLSVGLIQRGMKAEERRSNYRCDITYTNNSELGFDYLRDNLAANSVQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLVQGLHYKVELKDNSVELTEEGITIAEIALETSDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIEADSVVVAQITYQSLFKLYPRLSGMTGTAKTEEKEFLKMFQVPVIEVPTNLPNIRKDLPIQAFATARGKWDHVREEVEYMFRQGRPVLVGSTSVENSEYLSDLLKERKIPHNVLNARPKYAAREAETVAQAGRKKAITISTNMAGRGTDIILGGNPKMLAKEIIEDSLLPFLTKEVPDSEVDSEDVSQKVIIFVYVTLRSFILINIMLQVLSKVKVGPSSLALLAKTNIMAKYVSKNEGKAWTYKEAKSIISESVELSQSISLEELERLVGQQAETYPLGPTIALAYLSVLKDCERHCLSEGAEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEMFQKFNFDTEWAVRLISKITNDEDIPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGDNESCSQHIFQYMQAVVDEIVFKYVHPTKHPRSWDLSKLLKEFLTIGGKLLDGVSTEITEEALLNALTRSHQMKFTDINNVLLPGLPPPPNAFRGIRRKNSSLKRWLAICSDDLIQIGMYRTTANVLRKYLGDLLIASYLDVIQGSGFDDLYVKEVEVRFFLLTLPHFDLRMQRAVLVKTLDCFWRDHLINMNRLSSAVNVRGFGHRNPLEEYKIDGCKFFISMLSATRRLTVESLLGYWSSPMESQEIFIA 1095
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 390805 400682 + Bda015952.1 Bda03g00020 3279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00020 1095 TIGRFAM secA: preprotein translocase, SecA subunit 94 888 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bda03g00020 1095 Gene3D - 298 418 - -
Bda03g00020 1095 SUPERFAMILY Helical scaffold and wing domains of SecA 796 1092 IPR036266 -
Bda03g00020 1095 SUPERFAMILY Pre-protein crosslinking domain of SecA 296 417 IPR036670 GO:0016020|GO:0017038
Bda03g00020 1095 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 318 IPR014001 -
Bda03g00020 1095 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 68 1093 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bda03g00020 1095 SMART SecA_DEAD_2 76 452 IPR011115 GO:0005524|GO:0016020|GO:0017038
Bda03g00020 1095 SMART SecA_PP_bind_2 297 408 IPR011130 GO:0016020|GO:0017038
Bda03g00020 1095 Hamap Protein translocase subunit SecA [secA]. 68 1085 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bda03g00020 1095 CDD SF2_C_secA 470 761 IPR044722 -
Bda03g00020 1095 PRINTS SecA protein signature 167 181 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bda03g00020 1095 PRINTS SecA protein signature 463 476 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bda03g00020 1095 PRINTS SecA protein signature 129 153 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bda03g00020 1095 PRINTS SecA protein signature 236 256 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bda03g00020 1095 PRINTS SecA protein signature 183 193 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bda03g00020 1095 PRINTS SecA protein signature 389 411 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bda03g00020 1095 PRINTS SecA protein signature 426 443 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bda03g00020 1095 ProSiteProfiles SecA family profile. 69 793 IPR014018 -
Bda03g00020 1095 Gene3D - 88 465 IPR027417 -
Bda03g00020 1095 Pfam SecA preprotein cross-linking domain 304 408 IPR011130 GO:0016020|GO:0017038
Bda03g00020 1095 CDD DEXDc_SecA 108 464 - -
Bda03g00020 1095 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 68 1093 - -
Bda03g00020 1095 Gene3D Helical scaffold and wing domains of SecA 796 922 - -
Bda03g00020 1095 ProSitePatterns SecA family signature. 552 567 IPR020937 GO:0006605|GO:0006886|GO:0016020
Bda03g00020 1095 Gene3D Helical scaffold and wing domains of SecA 1010 1084 - -
Bda03g00020 1095 Pfam SecA Wing and Scaffold domain 791 1080 IPR011116 GO:0016020|GO:0017038
Bda03g00020 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 465 IPR027417 -
Bda03g00020 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 774 IPR027417 -
Bda03g00020 1095 Pfam SecA DEAD-like domain 84 451 IPR011115 GO:0005524|GO:0016020|GO:0017038
Bda03g00020 1095 Gene3D - 467 793 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00020 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] - zju:107421120 1710.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00020 Bda-Chr3:390805 Bda13g00403 Bda-Chr13:4979651 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g219 . . . Bda03g00020 . Bpe04g00013 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004074 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 2 1 1 8 1 1 44