Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00021 ATGGAGCCAAATGGGCGAGCTTTGGAAATGGATTCAGGCGAAAGACGTCTTAATGAGCTCGGATACAAGCAAGAACTCAGACGAGAAATGTCTCTCTTCAAAACGCTGGCCATAACATTCTCGACTATGGCGCTGTTCGTGGGGACGCCACTCTACGGTCAGAGCCTGCTGTACGCAGGGCCAGCGACCATGATATGGGGGTGGTGGTTCGTGGCTTTCTTCACCTGGTTCGTCGGTCTTGCCTTGGCTGAGATTTGCTCATCGTTTCCAACGACAGGGTCTCTGTACTTTTGGGCTGCTCATTTGGCTGGTCCAAGATGGGGGCCATTTGCGTCGTGGTGCTGCGCTTGGTTAGAAACACTTGGCATCATTCCTGGAATTGGTGCTCAGGCATATTCTGGAGCCCAGATGTTGCAGATCATTATACTTCTAGCTACAGGAACAAACAAAGGCGGGGGATATCTGGCTTCAAAGGGTGTATTTCTCTGCTTTTATATTTGTCTAACACTTACATGGGCCATTCTCAATTCCTTCTCTTTACGAGTCATCGCTTTCCTCAATGTTATTTCCATCTGGTGGCAGGTGATTGGAGGGCTTGTGATAGTCGTTACTCTTCCTCTGGTGGCAACGACAACACAGTCAGTTTCGTACGTTTTCACTCACTTTGAAACATCGCCTGAAGCGACGGGGATACAGAGCAAACCTTATGCAGTGATAATGTCGTTTCTTCTCAGCCAATTTTGTCTCTACGGCTATGACTTTGCCGCCCATTTGACAGAAGAAACCAAAGGAGCTGATAGAAATGGCCCTACTGCTATTCTTTCTAGCATAGCCATCATATCTGTTTTTGGATGGGCTTATTACTTGGCTCTCACTTTCAGCATAAGGGATCCAAGTTATTTGTTTGATCCAAACAATGAGACGGCAGGTTTATTAGTGCCGGCTCAGATCATCTACGAGGCTTTTCACGGAAGGTATCACAACTCCACTGGAGCCATACTTTTCCTCTGTATCATCTGGGGAACCTTCTTCTTCTGTGGACTTTCAATCACAGCTGGTGCTGCCAGAGTGGTATACGCCCTATCAAGAGATGGGGGTATCCCCCTTTCACATATATGGAGAAAAGTACACCCGAAGCACAAGGTCCCGACTAATGCAGTATGGCTCTGCGCAGTCATTTCCATTCTCATCGGCCTACCCATTTTGAAGCTCAATGTAATTTTCACAGCCATTGTGTCCATAAGCACAATAGGGTGGGTTGGTGCTTATGCTGTGCCGATTTTGGCAAGATTTTTTATGGAGGAGGAGAATTTCAAACCAGGACCCTTCTATTTGGGAAGAATAAGACGACCTATTTGCTTATTAGCTTTCTCGTACATATGTTATACCTGCTCAGTCTTTGCATTACCGACTCTCTATCCTCTTCGATGGGACACATTCAACTATGCGCCTGTAGCTGTTGGTGTAGTTTTGGCACTGGTGATGCTCTGGTGGATCTTTGATGCAAGGAAATGGTTCAAGGGACCTGTAAGAAATATTGATGCACCATGA 1551 46.55 MEPNGRALEMDSGERRLNELGYKQELRREMSLFKTLAITFSTMALFVGTPLYGQSLLYAGPATMIWGWWFVAFFTWFVGLALAEICSSFPTTGSLYFWAAHLAGPRWGPFASWCCAWLETLGIIPGIGAQAYSGAQMLQIIILLATGTNKGGGYLASKGVFLCFYICLTLTWAILNSFSLRVIAFLNVISIWWQVIGGLVIVVTLPLVATTTQSVSYVFTHFETSPEATGIQSKPYAVIMSFLLSQFCLYGYDFAAHLTEETKGADRNGPTAILSSIAIISVFGWAYYLALTFSIRDPSYLFDPNNETAGLLVPAQIIYEAFHGRYHNSTGAILFLCIIWGTFFFCGLSITAGAARVVYALSRDGGIPLSHIWRKVHPKHKVPTNAVWLCAVISILIGLPILKLNVIFTAIVSISTIGWVGAYAVPILARFFMEEENFKPGPFYLGRIRRPICLLAFSYICYTCSVFALPTLYPLRWDTFNYAPVAVGVVLALVMLWWIFDARKWFKGPVRNIDAP 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 401044 403107 - Bda015953.1 Bda03g00021 3280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00021 516 ProSitePatterns Amino acid permeases signature. 59 90 IPR004840 GO:0006865|GO:0016021|GO:0055085
Bda03g00021 516 Gene3D Amino acid/polyamine transporter I 25 507 - -
Bda03g00021 516 PIRSF AA_transporter 15 514 - -
Bda03g00021 516 PANTHER AMINO-ACID PERMEASE BAT1 4 515 - -
Bda03g00021 516 Pfam Amino acid permease 31 489 IPR002293 GO:0016020|GO:0022857|GO:0055085
Bda03g00021 516 PANTHER AMINO-ACID PERMEASE BAT1 HOMOLOG 4 515 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00021 - - - jre:109009850 869.381
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00021 Bda-Chr3:401044 Bda14g01203 Bda-Chr14:12000447 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g218 . . . Bda03g00021 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1430 Cone7ag1506 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015692 2 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 3 0 0 0 1 0 0 0 0 0 0 0 2 10