Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00028 ATGTCTCGGTCGCTGGTGCAACCCATCGGACAAAAGAGGCTGACGAACGTCGCTGTTGTTCGTTTGAAAAAGCATGGGATTCGCTTTGAGATTGCCTGCTACAAGAACAAGGTTCTTTCTTGGCGCTCTGGAGTAGAGAAGGATTTGGACGAAGTGTTGCAGTCACAGACTGTTTACTCAAATGTTTCTAAAGGAGTTCTTTCCAAATCAAAAGATTTAGTTAAAGCTTTCGGGACAGAAGATCAGAGCAAAATTTGTTTGGAGATTTTGGATAAAGGAGAGCTTCAAGTTGCCGGGAAGGAGAGGGAAGCTCAATTGTCCAGCCAGTTTCGAGATATTGCAACCATTGTCATGCAGAAAACCTTCAATCCTGAGACTCAGCGCCCTTATACCATTAGCATGATTGAGCGACTTATGCGTGAAACTCATTTTGCTGTTGATCCACATGGGAGCTCAAAAAAACAGGCTCTCGAAGTCATTCAAGAACTTCAGAAGCTTTTCCCGATCAAGCGCTCACCAATGAGAATAAGATTTACTATACCTGAACAGAAGTCAACATCACTTCTTGAAAAGCTCAAAGACTGGAATGCTACCATTGTGTCCATCGACCAATCTGGAAGTCAGCTCTCTTTTATCTGTGAATTGGATCCTAGCCTGTATAGAGACTGCAATCCCTTGATGAGCGATCTGCAGGGAAGATTTGAAGTGCTCTCATTCTCTTTGCATGAGGAAGGAGAGGTCGAGCATTATGATGATCATGAATACATGTCACAACCAAAACCAGAGGAATTGGCTAATACTGAGACGGAGCTGAGTGAGAAGTTACAGAACCAGACAATCTCGACAAGTGGCAAGAGTACGCAGGCCGAGGGGAAGCGCTGTACCACCTGTAATGTATATTTGAGTGATTCCAGTCAGTTTAGGGAGCACCATAAGAGTGAATGGCACAAGCATAATGTAAAGCGCAAAACCCGAAATCTTTCTCCTCTAACTGAAGAAGAATGCAGAGTGGAATTGGAAGTCGGTGACTCGAGGTCAGACTTGCAAGATTATTCATTTTAG 1062 43.79 MSRSLVQPIGQKRLTNVAVVRLKKHGIRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYSNVSKGVLSKSKDLVKAFGTEDQSKICLEILDKGELQVAGKEREAQLSSQFRDIATIVMQKTFNPETQRPYTISMIERLMRETHFAVDPHGSSKKQALEVIQELQKLFPIKRSPMRIRFTIPEQKSTSLLEKLKDWNATIVSIDQSGSQLSFICELDPSLYRDCNPLMSDLQGRFEVLSFSLHEEGEVEHYDDHEYMSQPKPEELANTETELSEKLQNQTISTSGKSTQAEGKRCTTCNVYLSDSSQFREHHKSEWHKHNVKRKTRNLSPLTEEECRVELEVGDSRSDLQDYSF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 461405 463761 + Bda015961.1 Bda03g00028 3287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00028 353 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Bda03g00028 353 Gene3D - 100 172 IPR037188 -
Bda03g00028 353 ProSitePatterns Zinc finger C2H2 type domain signature. 294 316 IPR013087 -
Bda03g00028 353 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Bda03g00028 353 Gene3D - 174 248 - -
Bda03g00028 353 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 229 IPR002140 GO:0042256
Bda03g00028 353 Gene3D - 1 96 IPR036786 -
Bda03g00028 353 PANTHER BNAANNG06530D PROTEIN 1 353 - -
Bda03g00028 353 Pfam SBDS protein, C-terminal domain 174 238 IPR046928 -
Bda03g00028 353 SUPERFAMILY beta-beta-alpha zinc fingers 286 323 IPR036236 -
Bda03g00028 353 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Bda03g00028 353 SMART ZnF_U1_5 289 323 IPR003604 GO:0003676|GO:0008270
Bda03g00028 353 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Bda03g00028 353 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 353 IPR039100 -
Bda03g00028 353 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00028 K14574 - csv:101215380 524.242