Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00030 ATGCGCCTCACACCCACCTTCTCAATCATGTCCAACTACCTTTCATCCTTACTTCACCGCTGCAAGTTTTCAACTTTACGACCAGATTCAAGCCTGACGACTACAACTATTGAACATATTTTAATTGCAGAGAATAAGCTATATTCCCATCTTTGCCAAGCATGCATTCGACAATGCAGGATGATCAAAGCCCACCACCCGTATGATGAAAAGCCTCAGAGAGTTGCTCGAGCTTTTAGAACAGCCAAGGCCATCCATGCCAGTGGATTGAAATTTGGGATTGCCTCAAAAGGGCTGTTAGGAAATGCCATATTCGACTTTTATGCTAAGTGCGGGAGTAGAAAATTGGCAGAGAATGTGTTTGTTCGGCTTAAGAAGAGAGATGTGTTTGCATGGAACTCTCTCATCTCCATGTACTTAAGGCGCGGATTTCTGAGCCAAGTTTTGCAGTCGTTTGGATCATTGTTGGCTTGTGAAGTGTCGCCAAATGAATTCACATTTGCAATGGTTTCATCTGCATGTGCAAGTTTGGGAGAGATAGACAATGGCAGACAGGTACATTGTGGTGTTATTAAGATGGGGTTGGAGCTCATTTCTTTTTGCCAAGGTGCCCTCATTGATATGTATGCTAAGTGCAATTTTTTAAGCGATGCTCGTCGAATTTTCGATTGTGCAGTATACTTGGACACAGTTTCTTGGACTGCCATGATTGCCAGCTACGTTCAAGTTGGTCAGTCTGAAGAAGCTATCATGGTGTTTGAACAGATGCAAAATCTTGGCATTGTACCTGATCAAGTGGCAATTGTAACTGTTATAAATGCTTATGTTTCTCTTGGAAGGCTTGCCACTGCTTGTGCGTTGTTTGCTGAGCTTCCAAACCCAAACGTTGTTGCTTGGAATGTGATGATTTCAGGGCATGCCAAGGGAGAAGAAGAGGAGGAAGCTATTTCATATTTTCTAAGAATGAGAAAAGCTGGAGTCAGATCCACTAGATCTACTCTAGGAAGTGTTTTAAGTGCCATCGCTAATTTATCGTTCTTCCACTATGGCTTACTGGTTCATGCCGAGGCAATTAAAGAAGGGTTGGATTCCAATTTCTATGTCGGAAGTTCGTTGGTGAATATGTATGCCAAGTGCTGTAAAATGAATGAGGCGAAAGTGGTTTTCGATTGTTTAAGCGACAAGAACCTTGTCTTGTGGAATGCAATGCTTGGAGGTTACTTACAGAATGGGAAAGCGAGAGAAGTCATTGAAGTGTTCTTTCACATGATGAAATTCGGTCCTCCTGCCGACGAATATACGTACACTAGCATCTTTAGTGCTTGTGCGTCTTTGGAATATCATGAAATGGGTCGACAACTTCATACGGTAGTGCTAAAGAACGAAATGGCATCAAATTTATTTGTCGGAAATGCATTGATAGACATGTATTCAAAGTCAGGAGCTCTGAAACAAGCTAGAAAACATTTCGAATCAATGGGGAATCACGACAGTATTTCTTGGAATTCGATTATCGTAGGGTATGTGCAGGAAGAGGAGGAGGAAGAAGCTTTCTTCATGTTCAAAAGGATGAATTCAAATGGGATTTTGCCAGATGAGGTGTCTTTGGCAAGCATGCTCAGTGCTTGTGCAAATGTTAAAGTATTGGAGCAGGGCCAGCAAATCCACTGCATATCACTCAAAGCGGGTTTAGAAACGAGCATTTATGTAGGAAGCTCCCTTATCGACATGTATAGCAAATCCGGAGGAATCGAAGCTGCTCGGAAAGTTTTTTCTTGCATGCCTTTACACTCAGTTGTCTCAATGAACGCTCTAATGGCTGGGTATACTCAAGGAAACTGGGAAGAAACACTACAGCTCTTTCGAGTAATGCAAGAAACAGAAATAAAACCAACAGAAATTACTTTCAGTATCCTTTTAGATGCATGCAGTGGAGTGGCTTTGCTGTCATTGGGCAAGCAAATCCACTCTTTAGTTCTTAAGTGGGGCCTTTTATCTGTTAGTGATATGTTGGTTATTTCTCTATTGAGTATGTATATAAACTACCAGAGGAAAAAAGAGGCAGATGCTATTTTCTCAGAGTTCCCATATCCGAAGAGCAGAGTATTATGGACTGCCATAATTTCAGGATTTGCTCAAAATAATTATTGTAAGGAGGCTTATAGATATTATCAGGGCATGCGAGGCGAGAATCTCGTGCCGGACCAAGCCACATTTGCCAGCATTCTTCGAGCAAGTGCTGTATTAGCTTCTTTGACGAATGGAAGGGAAGTGCATTCGCTTATTTTTCGCACTGGTTTTGACTTGGACGAATTAACATGCAGTGCTCTTGTAGATATGTATGCAAAATGTGGGGATGTAAGTAGTTCAATGCGGGTTTTCGAAGAAATGGGTAGCAAGAATGATGTGATTTCTTGGAACTCGATGATAGTCGGCCTAGCCAAGAATGGATATGCAGAAAGTGCGCTTGAGATGTTTGAAGAGATGAATACATCAAATGTTTTTCCAGATGAAGTCACATTCCTTGGGGTTCTTAATGCTTGTAGTCATGCAGGGAAAGTTTTGGAAGGCCGGAAAATCTTCGAGTCCATGGTTAACAATTACGGAATCGTTCCTCGGAGCGATCATAATGCGTGCATGGTCGATCTTCTTGGACGGTGGGGATTTCTGGAAGAAGCTTGGGATTTCATCAACGGACTAAATAGTGAAGCAGATGGTATGGTATGGGCGGCATTTCTTGGAGCCTGCAGAATACACGGGGACGAAGAGAGAGGGAGACTTGCAGCTGAGAAACTGATCGAGTTACATCCGGAGAATTCATCCTCGTACGTTCTTCTCTCAAATATATATGCAGAATCAGGAAACTGGAAGGGAGCAGGCAGTTTGAGGAAGGAAATGGAGGAAAAAGGAGTGAAAAAAGTGGCTGGATGTAGCTGGATGTAG 2943 42.41 MRLTPTFSIMSNYLSSLLHRCKFSTLRPDSSLTTTTIEHILIAENKLYSHLCQACIRQCRMIKAHHPYDEKPQRVARAFRTAKAIHASGLKFGIASKGLLGNAIFDFYAKCGSRKLAENVFVRLKKRDVFAWNSLISMYLRRGFLSQVLQSFGSLLACEVSPNEFTFAMVSSACASLGEIDNGRQVHCGVIKMGLELISFCQGALIDMYAKCNFLSDARRIFDCAVYLDTVSWTAMIASYVQVGQSEEAIMVFEQMQNLGIVPDQVAIVTVINAYVSLGRLATACALFAELPNPNVVAWNVMISGHAKGEEEEEAISYFLRMRKAGVRSTRSTLGSVLSAIANLSFFHYGLLVHAEAIKEGLDSNFYVGSSLVNMYAKCCKMNEAKVVFDCLSDKNLVLWNAMLGGYLQNGKAREVIEVFFHMMKFGPPADEYTYTSIFSACASLEYHEMGRQLHTVVLKNEMASNLFVGNALIDMYSKSGALKQARKHFESMGNHDSISWNSIIVGYVQEEEEEEAFFMFKRMNSNGILPDEVSLASMLSACANVKVLEQGQQIHCISLKAGLETSIYVGSSLIDMYSKSGGIEAARKVFSCMPLHSVVSMNALMAGYTQGNWEETLQLFRVMQETEIKPTEITFSILLDACSGVALLSLGKQIHSLVLKWGLLSVSDMLVISLLSMYINYQRKKEADAIFSEFPYPKSRVLWTAIISGFAQNNYCKEAYRYYQGMRGENLVPDQATFASILRASAVLASLTNGREVHSLIFRTGFDLDELTCSALVDMYAKCGDVSSSMRVFEEMGSKNDVISWNSMIVGLAKNGYAESALEMFEEMNTSNVFPDEVTFLGVLNACSHAGKVLEGRKIFESMVNNYGIVPRSDHNACMVDLLGRWGFLEEAWDFINGLNSEADGMVWAAFLGACRIHGDEERGRLAAEKLIELHPENSSSYVLLSNIYAESGNWKGAGSLRKEMEEKGVKKVAGCSWM 980
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 466011 468953 - Bda015963.1 Bda03g00030 3289

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00030 980 PANTHER OSJNBB0070J16.5 PROTEIN 204 278 - -
Bda03g00030 980 PANTHER OSJNBB0070J16.5 PROTEIN 88 213 - -
Bda03g00030 980 PANTHER OS07G0578800 PROTEIN-RELATED 278 496 IPR045215 GO:0003723|GO:0009451
Bda03g00030 980 PANTHER OS07G0578800 PROTEIN-RELATED 766 980 IPR045215 GO:0003723|GO:0009451
Bda03g00030 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Bda03g00030 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 631 IPR002885 -
Bda03g00030 980 Pfam PPR repeat 471 493 IPR002885 -
Bda03g00030 980 Pfam PPR repeat 773 800 IPR002885 -
Bda03g00030 980 Pfam PPR repeat 297 327 IPR002885 -
Bda03g00030 980 Pfam PPR repeat 572 595 IPR002885 -
Bda03g00030 980 Pfam PPR repeat 131 152 IPR002885 -
Bda03g00030 980 Pfam PPR repeat 702 731 IPR002885 -
Bda03g00030 980 PANTHER OS07G0578800 PROTEIN-RELATED 674 763 IPR045215 GO:0003723|GO:0009451
Bda03g00030 980 PANTHER OS07G0578800 PROTEIN-RELATED 595 665 IPR045215 GO:0003723|GO:0009451
Bda03g00030 980 PANTHER OS07G0578800 PROTEIN-RELATED 494 595 IPR045215 GO:0003723|GO:0009451
Bda03g00030 980 PANTHER OS07G0578800 PROTEIN-RELATED 88 213 IPR045215 GO:0003723|GO:0009451
Bda03g00030 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Bda03g00030 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Bda03g00030 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 837 872 IPR002885 -
Bda03g00030 980 Pfam E motif 919 980 IPR046848 -
Bda03g00030 980 Gene3D Tetratricopeptide repeat domain 194 346 IPR011990 GO:0005515
Bda03g00030 980 Gene3D Tetratricopeptide repeat domain 819 980 IPR011990 GO:0005515
Bda03g00030 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 939 973 IPR002885 -
Bda03g00030 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Bda03g00030 980 PANTHER OS07G0578800 PROTEIN-RELATED 204 278 IPR045215 GO:0003723|GO:0009451
Bda03g00030 980 Pfam PPR repeat family 395 443 IPR002885 -
Bda03g00030 980 Pfam PPR repeat family 497 545 IPR002885 -
Bda03g00030 980 Pfam PPR repeat family 598 643 IPR002885 -
Bda03g00030 980 Pfam PPR repeat family 802 849 IPR002885 -
Bda03g00030 980 Pfam PPR repeat family 229 276 IPR002885 -
Bda03g00030 980 Gene3D Tetratricopeptide repeat domain 36 193 IPR011990 GO:0005515
Bda03g00030 980 PANTHER OSJNBB0070J16.5 PROTEIN 674 763 - -
Bda03g00030 980 PANTHER OSJNBB0070J16.5 PROTEIN 494 595 - -
Bda03g00030 980 TIGRFAM PPR: pentatricopeptide repeat domain 499 533 IPR002885 -
Bda03g00030 980 TIGRFAM PPR: pentatricopeptide repeat domain 773 799 IPR002885 -
Bda03g00030 980 TIGRFAM PPR: pentatricopeptide repeat domain 297 328 IPR002885 -
Bda03g00030 980 TIGRFAM PPR: pentatricopeptide repeat domain 231 264 IPR002885 -
Bda03g00030 980 TIGRFAM PPR: pentatricopeptide repeat domain 702 735 IPR002885 -
Bda03g00030 980 TIGRFAM PPR: pentatricopeptide repeat domain 804 838 IPR002885 -
Bda03g00030 980 TIGRFAM PPR: pentatricopeptide repeat domain 839 872 IPR002885 -
Bda03g00030 980 TIGRFAM PPR: pentatricopeptide repeat domain 398 427 IPR002885 -
Bda03g00030 980 Gene3D Tetratricopeptide repeat domain 448 554 IPR011990 GO:0005515
Bda03g00030 980 Gene3D Tetratricopeptide repeat domain 555 650 IPR011990 GO:0005515
Bda03g00030 980 Gene3D Tetratricopeptide repeat domain 347 447 IPR011990 GO:0005515
Bda03g00030 980 Gene3D Tetratricopeptide repeat domain 652 783 IPR011990 GO:0005515
Bda03g00030 980 PANTHER OSJNBB0070J16.5 PROTEIN 278 496 - -
Bda03g00030 980 PANTHER OSJNBB0070J16.5 PROTEIN 766 980 - -
Bda03g00030 980 PANTHER OSJNBB0070J16.5 PROTEIN 71 136 - -
Bda03g00030 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
Bda03g00030 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 770 800 IPR002885 -
Bda03g00030 980 PANTHER OS07G0578800 PROTEIN-RELATED 71 136 IPR045215 GO:0003723|GO:0009451
Bda03g00030 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 802 836 IPR002885 -
Bda03g00030 980 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 700 734 IPR002885 -
Bda03g00030 980 PANTHER OSJNBB0070J16.5 PROTEIN 595 665 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00030 - - - qsu:112003365 1243.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00030 Bda-Chr3:466011 Bda03g01751 Bda-Chr3:56879665 3.46E-28 dispersed
Bda03g00030 Bda-Chr3:466011 Bda08g00065 Bda-Chr8:527492 8.02E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1213 . Blo12g01108 . Bda03g00030 . Bpe04g00020 Bma04g00028 . . Cmo12g00334 . Cma09g01089 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo09g01097 . . . Car09g00987 . . Bhi09g01512 . . . . . . Cla09g00917 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011120 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 3 1 0 1 0 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00030 Bda_Chr03 FPKM 0.0 0.0 0.422868 0.0 1.137171 0.0 0.879342 0.152227 0.0