Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00032 GCCATGTTCTCCGCCAAGGACGTCCTCTCTTTATCTGAGGCCGATCGTCTTCTTCCTTCCGCTACCCGCTTGAGCTCCATCGAGATTCACTCCAACCTCCCCACTAATTCTCCTTCTCCTCTCGACTCAATCCCTTCTCCCTACTCCAAATCCGTTGATTTTAAGCTTTTTATCTCCGACAGAACACACTTCAAGCGCTTCTCTTACATTTCCTCCATTTTAGCACTTCTTCTTCTCGCTCTCGTTCTTCTTCTTCACTTTTTCCCTCACAAACGCACTCACACTCCACCTTCAAACGATCTCTCTGTGGCTGTTAAACAAGCCCTGACATTTTTCGATGCGCAAAAATCAGGAAAGTACCCGCAAGACAGCCCTGTAAAGTTTCGAGGAGATTCAGGAACCAAAGATGGAAGTTCCACCAAACCACCGGCTGATCTTTTGGGCGGTTTCTACGATTCTGGAAACAACATGAAATTTACCTTCCCCACAGCTTATGCTATTACTCTTTTGAGTTGGAGTGTGATAGAGTATCACAAAAATTATGAAGCAATTGGCGAGATTGTTCATGTCAAAGATATAATCAGATGGGGCACTGATTATTTGCTCAAAGTGTTTGTTCCATCGAATGGAACTTCCGATCAAACTATAATCTACTCTCAGGTTGGTAGCGCTAATAACGAGAGTAAAGTGCCTAATGATATCTGTTGGCAGAGACCGGAGGACATGGATTATCAGAGACTTGTTTCCAAATGTGACGCTAAGGCCTCAGATTTGGCCGGAGAAATCGTAGCTGCATTATCGGCTGCATCGTTAATATTTAGAGAAGATGAAAACTACGCCAGAAAATTAATCGAAGCTGCAGAGAAGTTGTTTGAACTGGCCATCAATGAAGATAACGATCAAAAGGGAACTTACACCATGATTGATTCATGTGGAGGCGAAGCAAGAAATTTTTACAACTCAACAGGGTTTGAGGATGAACTGATCTGGGCTGGAACCTGGCTGTTCTTCGCCACCGGGAATGCTTCTTATCTTGCATATTCAACTAACTCTGATCGATTAAAGTCGTCGGAGATAGATGAAGAGAGTTCTGATAAAGGGATCTTCTATTGGAACAACAAGCTCAGTGCCAATGCAGTTTTGCTGACTCGAATTCGATATTTTCAAGATCTTGGCTACCCTTTTGAAAATGCTTTTGAATTATCGTCATCCATGACTGATTCCCTCATCTGCTCATATCTTTCTAGTCAATACAGTCGCACTCCAGGTGGATTGATCATCCTGAGGCCTGATGAAGCCTCACTTCAATTTGCTGCAACAACATCATTTATTGTCACATTATACTCTGATTATCTCGATCTTCTGCGTAAAAAGAGCATTGCTTGCGGCGATTCTGCGTTTTCTGTGAAAGCTTTGCAGAGATTTGCCCTGTCTCAGGCAAGTAAAATGCTAATGCCATGCCTTTGGGATTTGAATTTGAGAGTATTTATTGTTGATGAGCTGTTTTCTCAGGTTAATTACATATTAGGAGATAACCCGCAGAAAATGAGCTATATGGCTGGGTATGGAGACAAGTATCCGACCCATATTCATCACCGAGGCGCATCGATCCCATCTGACGGTGAGGCTCGCACTTGTGCAGAAGGGGATCAGTGGCTTTCGGCGAAGAATTCAAATCCAAATGTTCTTGTGGGAGCCATGGTTGCAGGGCCGAATGAGCTCGATAATTTCTTAGACGAAAGAGACAAGCCTTGGTTTACAGAGCCAAGCATTGCCGGGAATGCTGGTTTAGTGGCAGCTCTCATTGCCGCCCATGGGATTCGGGCTGATCCGTCTGCTTTGAAGGCCGGTAACTCGGGGATAGACCGAGATTACATCTTCAGAAAAATTGCTCCCATTCCTTGA 1905 44.15 AMFSAKDVLSLSEADRLLPSATRLSSIEIHSNLPTNSPSPLDSIPSPYSKSVDFKLFISDRTHFKRFSYISSILALLLLALVLLLHFFPHKRTHTPPSNDLSVAVKQALTFFDAQKSGKYPQDSPVKFRGDSGTKDGSSTKPPADLLGGFYDSGNNMKFTFPTAYAITLLSWSVIEYHKNYEAIGEIVHVKDIIRWGTDYLLKVFVPSNGTSDQTIIYSQVGSANNESKVPNDICWQRPEDMDYQRLVSKCDAKASDLAGEIVAALSAASLIFREDENYARKLIEAAEKLFELAINEDNDQKGTYTMIDSCGGEARNFYNSTGFEDELIWAGTWLFFATGNASYLAYSTNSDRLKSSEIDEESSDKGIFYWNNKLSANAVLLTRIRYFQDLGYPFENAFELSSSMTDSLICSYLSSQYSRTPGGLIILRPDEASLQFAATTSFIVTLYSDYLDLLRKKSIACGDSAFSVKALQRFALSQASKMLMPCLWDLNLRVFIVDELFSQVNYILGDNPQKMSYMAGYGDKYPTHIHHRGASIPSDGEARTCAEGDQWLSAKNSNPNVLVGAMVAGPNELDNFLDERDKPWFTEPSIAGNAGLVAALIAAHGIRADPSALKAGNSGIDRDYIFRKIAPIP 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 472624 474855 + Bda015965.1 Bda03g00032 3291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00032 634 Pfam Glycosyl hydrolase family 9 104 601 IPR001701 GO:0004553|GO:0005975
Bda03g00032 634 PANTHER ENDOGLUCANASE 502 630 - -
Bda03g00032 634 PANTHER ENDOGLUCANASE 32 484 - -
Bda03g00032 634 PANTHER ENDO-1,4-BETA-GLUCANASE 502 630 - -
Bda03g00032 634 PANTHER ENDO-1,4-BETA-GLUCANASE 32 484 - -
Bda03g00032 634 MobiDBLite consensus disorder prediction 117 141 - -
Bda03g00032 634 Gene3D - 97 614 IPR012341 GO:0005975
Bda03g00032 634 SUPERFAMILY Six-hairpin glycosidases 99 607 IPR008928 GO:0005975
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00032 K01179 E3.2.1.4; endoglucanase [EC:3.2.1.4] - tcc:18592553 719.153
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00032 Bda-Chr3:472624 Bda08g00434 Bda-Chr8:4374173 5.85E-136 dispersed
Bda12g00286 Bda-Chr12:3091688 Bda03g00032 Bda-Chr3:472624 5.29E-34 dispersed
Bda03g00032 Bda-Chr3:472624 Bda06g00174 Bda-Chr6:2442430 2.70E-138 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1227 . Blo12g01107 . Bda03g00032 . . Bma04g00030 . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1435 . . . . . . . . . . . . . . . . . . . Car05g00700 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011121 1 0 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00032 Bda_Chr03 FPKM 2.124672 2.374781 4.215084 4.134233 4.453743 3.676986 3.95198 8.635631 8.952988