Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00035 ATGGCTATTGACTTCATGGCCGGCTTCCCTAACGTCGCCGATCGACAGATGGCCTTCCAGGAGGCTGCCTCTCAAGGTTTGAAGAGCATGTCGGGCCACGCGCGCTTCAGGCGCGGTCCCCTTCCCTCTCCCTCCTCATCGTCGACCACCTCTGCCCCTCTCTCCCAGACTTTGAGCCTCACCCCAACTACCTTCACTTCTCCCTCAACTGTCTCCAACACTCCCATTGCGCCTCCGGCGAGCTTCGTTCACCCTCAGCCGCCACAAAGCATGACTCTTGACTTCACAAAACCTAATATTTTGAGCTCAAATGTCAAGACTAACGACCTCGAGTTCACCAAAGACAGCTTCAGCGTCTCCTCAAGTTCCTCGTTCATGTCGTCGGCCATCACCGGAGACGGGAGCGTGTCAAATGGAAAGCTTGGACCTTCGATCTTCCTATCCTCCGCACCGGCAGTCTCCGCGGGAAAGCCGCCTCTCTCAGCGGCTCCCTACAAGAAGAGGTGTCACGAGCACTCGCAGTCTCAATCCCACTCCTACTCTCAGTCCCAGTCCCAGTCCCGCTCCCACTCCCACTCGGAAAACATCTCCGGAAAACTTTCCGGTTCTACTTCCGCTTCCGGCAAGTGCCACTGCTCCAAAAGAAGGAAAAACCGTGTAAAGAAAACAATAAGAGTCCCCGCGGTGAGTTCAAAGATCGCCGACATTCCACCGGACGAGTATTCGTGGAGAAAATACGGACAGAAGCCGATCAAAGGGTCGCCATACCCACGGGGATACTACAAGTGCAGTACGGTGAGGGGATGCCCGGCGAGGAAACACGTAGAAAGGGCTCCGGACGATCCGAAGATGCTAATCGTAACGTACGAGGGAGAGCACCGGCATACGCAGGGGGCGATGCAGGAGAACATGGGCGGAGGAGTTGGGCTGGTGTTCGTCGAGTCAACGTGA 951 56.26 MAIDFMAGFPNVADRQMAFQEAASQGLKSMSGHARFRRGPLPSPSSSSTTSAPLSQTLSLTPTTFTSPSTVSNTPIAPPASFVHPQPPQSMTLDFTKPNILSSNVKTNDLEFTKDSFSVSSSSSFMSSAITGDGSVSNGKLGPSIFLSSAPAVSAGKPPLSAAPYKKRCHEHSQSQSHSYSQSQSQSRSHSHSENISGKLSGSTSASGKCHCSKRRKNRVKKTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPKMLIVTYEGEHRHTQGAMQENMGGGVGLVFVEST 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 499383 501124 + Bda015969.1 Bda03g00035 3294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00035 316 MobiDBLite consensus disorder prediction 29 95 - -
Bda03g00035 316 Gene3D WRKY domain 221 298 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda03g00035 316 MobiDBLite consensus disorder prediction 153 221 - -
Bda03g00035 316 ProSiteProfiles WRKY domain profile. 232 298 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda03g00035 316 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 189 312 - -
Bda03g00035 316 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 31 187 IPR044810 GO:0003700
Bda03g00035 316 Pfam Plant zinc cluster domain 166 235 IPR018872 -
Bda03g00035 316 SUPERFAMILY WRKY DNA-binding domain 235 296 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda03g00035 316 PANTHER WRKY TRANSCRIPTION FACTOR 17-RELATED 31 187 - -
Bda03g00035 316 SMART WRKY_cls 237 297 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda03g00035 316 MobiDBLite consensus disorder prediction 175 209 - -
Bda03g00035 316 Pfam WRKY DNA -binding domain 239 295 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda03g00035 316 MobiDBLite consensus disorder prediction 41 79 - -
Bda03g00035 316 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 189 312 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00035 Bda-Chr3:499383 Bda04g00267 Bda-Chr4:32616742 1.10E-57 dispersed
Bda01g00700 Bda-Chr1:34258875 Bda03g00035 Bda-Chr3:499383 3.61E-137 wgd
Bda13g01302 Bda-Chr13:35252857 Bda03g00035 Bda-Chr3:499383 3.87E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15600 PF03106 WRKY 6.20E-26 CL0274 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00035 - - csv:101218039 376.326