Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00039 ATGGCCTCCGTTCCTCGATCCTCCGGTTCCCTGCAACCAAGATCCGGTGGGAAGATTGTACGAACCAGGCGAACCTTGCGTTCCAGAACTCCATACGACCGACCCAGCCTTTCCACCAATCAAACATCAGAAATGGACAGCTCTATTAAAAAGGATCAAGTGGGAAGGAAAGAAACCAAACGTCTTATCGAGCAATTGTTGATGCAGGAGACCTTCTCAAGCAGGGACGAGTGTGATAGATTTATGGAAATTCTTAAATCTAGAGTTATAGAGAGTTCAAACATGGTAGAAGCACACGATGAGAGACTGACTGAGACACCGAAGAAAACAGTTGCCAATGGTATTATTACATTATTTGATAAAAGATGGCCTGCTTATACGTTTGATTTAATTAAACTACTATTTACAGATAGGGTCGGTCCTGATCTCTGCAGCACAGCGGTTTTGGAGGCAAGAAAATGGTTAAATGAGAAGAGATCTGGATCTAACTCAAAGCTGGAGTACGAGCAGGGGAATCACATCTCAGATGATGTTGTGAATGAAGAGTTACATTCACCTGTAGATGTGGCAAAATCATATATGCAAGCACGTCCTCGTTGGGCGTCTCCTTTCATTAACCATCTTGAGTTAAAATCTCCCCCATCAGGGATTCAGCTGTTCATGGAAGAAACAAAATATTCAATTGGTGAAAGTTCACTGCCCACTTCTAAGGAGAGCAAAATTCTCAAGTTTTTGGGCTTTATGTGGAATCCGTTATCCTGGGTCATGGAAGCTGCTGCGATCATGGCTATAGCGTTGGCAAATGGAGGTGGAAGGCCTCCTGACTGGCAGGACTTCATTGGGATCATCATCTTACTTTTAATCAACTCTACAATCAGTTTTATAGAAGAAAACAATGCTGGAAACGCGGCTGCAGCTCTTATGGCTGGTCTTGCTCCCAAAACTAAGGTTCTAAGAGATAGTCGTTGGAGTGAGCAAGACGCCTCGATTCTAGTCCCAGGAGATATAATCAGCATTAAGCTAGGAGATATCATTCCTGCCGATGCGCGTCTTCTCGAGGGTGATCCCTTGAAAATTGATCAATCTGCTCTGACAGGAGAATCCCTTCCTGTCACCAAGAACCCTTCAGATGAAGTTTTTTCAGGCTCGACATGTAAACAGGGAGAAATTGAAGCAGTTGTTATTGCCACTGGTGTGCACACCTTTTTCGGCAAAGCCGCTCACTTGGTAGACAACACCAATCAAGTTGGCCATTTCCAGAAAGTTCTAACAGCCATTGGTAATTTCTGTATTTGCTCAATCGCCGTTGGAATTGTTATTGAGATTATTGTCATGTACCCCATACAACATCGAGAGTACAGAGACGGCATTGACAACTTGCTGGTGCTTTTGATCGGAGGAATTCCAATCGCCATGCCAACTGTTTTGTCCGTCACCATGGCCATTGGCTCTCACAGGCTTTCCCAGCAAGGTGCTATCACTAAGAGAATGACAGCTATTGAGGAAATGGCAGGTATGGATGTCCTCTGCAGTGACAAGACTGGAACCCTCACTTTGAACAAGTTGACCGTAGACAGAAGCTTGGTCGAAGTGTTTGTTAAAGGGGTGGAAAAAGAGTACGTGATCGTTCTAGCTGCAAGAGCTTCTCGCATTGAAAATCAGGATGCCATTGATGCTGCTATTGTTGGAACACTTGCAGATCCGAAGGAGGCGCGAGCTGGTATTACGGAAGTTCATTTCTTTCCATTTAATCCCGTAGATAAGAGAACTGCTCTGACTTACATTGATCCTCAAGGGAACTGGCACCGAGCTAGCAAGGGCGCCCCTGAGCAAATATTAACTCTATGTAATGCGAAGGAAGATGTGAAGAAAAAGGTTCACTCGGTTATTGATAAGTTCGCCGAGCGAGGACTTCGTTCTTTGGCTGTTGCGAGACAGGAAGTGCCCGAGAAATCTAAAGATAGTTCAGGTGGGCCATGGCAGTTTGTTGGTTTATTATCTCTGTTTGATCCTCCCAGGCATGATAGTGCAGAAACCATCAGGAGAGCTCTGAACCTTGGAGTAAATGTCAAGATGATTACTGGCGATCAGCTAGCCATTGCCAAGGAGACCGGCCGAAGACTTGGAATGGGAACAAACATGTACCCTTCTTCTTCATTACTTGGTCAAAACAAGGATGCTTCAATTGCTGCCCTACCTGTGGATGAATTGATTGAGAAAGCTGATGGGTTTGCCGGTGTATTTCCAGAACACAAGTATGAAATTGTAAAGAAGTTACAAGAGAAAAAACACATATGTGGTATGACTGGAGATGGAGTGAATGATGCTCCAGCTCTAAAGAAGGCAGACATTGGCATTGCTGTTGCTGATGCTACTGATGCTGCAAGAAGTGCTTCAGACATTGTCTTGACTGAACCCGGATTGAGTGTAATTATTAGTGCTGTGTTGACTAGCAGAGCAATTTTCCAAAGGATGAAGAACTACACTATTTATGCCGTTTCAATTACAATACGTATTGTGTTTGGCTTCATGTTCATTGCATTGATTTGGAAGTTCGACTTTGCACCGTTCATGGTTTTAATCATAGCCATTCTAAACGACGGAACAATCATGACAATTTCAAAGGATAGAGTTAAGCCATCCCCACTGCCAGACAGCTGGAAATTGAAAGAGATTTTTGCTACTGGTGTCGTCCTGGGAGGGTACTTGGCTCTCATGACAGTCATATTTTTCTGGGCGATGAGAGATACCGAATTCTTCTCGGACAAGTTTGGTGTGAGATCACTAAGGCAAAGCCCTGACGAAATGATGGCAGCCTTGTATCTACAAGTGAGTATTGTCAGCCAGGCTCTTATTTTCGTCACCCGATCCCGCAGTTGGTCCTATGTCGAACGACCCGGTCTGCTCTTAGTTGGTGCTTTCGTAATTGCTCAGTTGATTAGATCAAACTTTAATTCGTCCCGACCCTTTACAAGCACTCTCCTGATTACTGCCTTCACGACGAAGAAAGATTACGGCAAAGAAGAGAGAGAAGCTCAGTGGGCGACTGCTCAGAGGACTCTGCATGGTCTTCAAGCTCCGGAAACCAACAACGTTTTCTCTGATAAGAGTAGTTACAGAGAGCTATCTGAGATTGCCGAGCAAGCCAAGAGACGAGCAGAGGTGGCGAGGCTCCGGGAGTTGAATACATTGAAGGGTCATGTTGAATCAGTGGTGAAGCTCAAAGGGTTGGACATCGACAACATTCAGCAACACTACACTGTTTAA 3267 44.66 MASVPRSSGSLQPRSGGKIVRTRRTLRSRTPYDRPSLSTNQTSEMDSSIKKDQVGRKETKRLIEQLLMQETFSSRDECDRFMEILKSRVIESSNMVEAHDERLTETPKKTVANGIITLFDKRWPAYTFDLIKLLFTDRVGPDLCSTAVLEARKWLNEKRSGSNSKLEYEQGNHISDDVVNEELHSPVDVAKSYMQARPRWASPFINHLELKSPPSGIQLFMEETKYSIGESSLPTSKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGRPPDWQDFIGIIILLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDSRWSEQDASILVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDNTNQVGHFQKVLTAIGNFCICSIAVGIVIEIIVMYPIQHREYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRSLVEVFVKGVEKEYVIVLAARASRIENQDAIDAAIVGTLADPKEARAGITEVHFFPFNPVDKRTALTYIDPQGNWHRASKGAPEQILTLCNAKEDVKKKVHSVIDKFAERGLRSLAVARQEVPEKSKDSSGGPWQFVGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQNKDASIAALPVDELIEKADGFAGVFPEHKYEIVKKLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWAMRDTEFFSDKFGVRSLRQSPDEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLVGAFVIAQLIRSNFNSSRPFTSTLLITAFTTKKDYGKEEREAQWATAQRTLHGLQAPETNNVFSDKSSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDIDNIQQHYTV 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 511302 523183 - Bda015973.1 Bda03g00039 3298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00039 1088 PANTHER CALCIUM-TRANSPORTING ATPASE 997 1068 - -
Bda03g00039 1088 PANTHER CALCIUM-TRANSPORTING ATPASE 228 981 - -
Bda03g00039 1088 CDD P-type_ATPase_H 233 980 IPR006534 GO:0008553|GO:0016021|GO:0120029
Bda03g00039 1088 Pfam haloacid dehalogenase-like hydrolase 506 783 - -
Bda03g00039 1088 Gene3D - 507 806 IPR023214 -
Bda03g00039 1088 SFLD C1.7: P-type atpase like 492 820 - -
Bda03g00039 1088 ProSitePatterns E1-E2 ATPases phosphorylation site. 512 518 IPR018303 -
Bda03g00039 1088 PANTHER PLASMA MEMBRANE ATPASE 228 981 - -
Bda03g00039 1088 SUPERFAMILY Calcium ATPase, transmembrane domain M 233 980 IPR023298 -
Bda03g00039 1088 MobiDBLite consensus disorder prediction 1 15 - -
Bda03g00039 1088 PANTHER PLASMA MEMBRANE ATPASE 997 1068 - -
Bda03g00039 1088 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 227 982 IPR006534 GO:0008553|GO:0016021|GO:0120029
Bda03g00039 1088 Coils Coil 1039 1059 - -
Bda03g00039 1088 SUPERFAMILY HAD-like 506 816 IPR036412 -
Bda03g00039 1088 Gene3D - 313 397 - -
Bda03g00039 1088 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 282 528 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda03g00039 1088 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 744 859 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda03g00039 1088 SFLD p-type atpase 492 820 IPR044492 -
Bda03g00039 1088 Gene3D - 1037 1088 - -
Bda03g00039 1088 PRINTS H+-transporting ATPase (proton pump) signature 626 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda03g00039 1088 PRINTS H+-transporting ATPase (proton pump) signature 769 785 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda03g00039 1088 PRINTS H+-transporting ATPase (proton pump) signature 941 962 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda03g00039 1088 PRINTS H+-transporting ATPase (proton pump) signature 800 825 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda03g00039 1088 PRINTS H+-transporting ATPase (proton pump) signature 741 757 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bda03g00039 1088 SUPERFAMILY Calcium ATPase, transduction domain A 313 410 IPR008250 -
Bda03g00039 1088 PRINTS P-type cation-transporting ATPase superfamily signature 686 696 - -
Bda03g00039 1088 PRINTS P-type cation-transporting ATPase superfamily signature 769 788 - -
Bda03g00039 1088 PRINTS P-type cation-transporting ATPase superfamily signature 792 804 - -
Bda03g00039 1088 PRINTS P-type cation-transporting ATPase superfamily signature 360 374 - -
Bda03g00039 1088 PRINTS P-type cation-transporting ATPase superfamily signature 664 675 - -
Bda03g00039 1088 PRINTS P-type cation-transporting ATPase superfamily signature 510 524 - -
Bda03g00039 1088 MobiDBLite consensus disorder prediction 1 54 - -
Bda03g00039 1088 Gene3D - 275 982 - -
Bda03g00039 1088 Pfam E1-E2 ATPase 312 489 - -
Bda03g00039 1088 Gene3D - 522 669 IPR023299 GO:0000166
Bda03g00039 1088 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00039 Bda-Chr3:511302 Bda09g00970 Bda-Chr9:38857369 0 dispersed
Bda13g01294 Bda-Chr13:35220963 Bda03g00039 Bda-Chr3:511302 0 wgd
Bda02g00275 Bda-Chr2:41226892 Bda03g00039 Bda-Chr3:511302 1.43E-21 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00039 K01535 - zju:107420789 1482.23