Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00042 CTTCATACCAGATTTATCAGGCTTATCAACCCCATGGCTAGTCTTTGGGTTACACTCCCATCGCTTTCCCTCGCAAAAAAATTCTTCCCCGCTGAAAGGATCCGTTTCGGTCCTTCCATTCGCTTTCAAATCATGAACTCAATCTCCGATTCCACTTCTGTTTCTCCGTCTTCGTCGCCGTTCCAGGTTCCTGGGCTAGATTCTGACCAGATCGACCGGATTGCCGAGCAGACCTTTCAGAGGTACTCGTTGCCTTCTTCCTCTTCTTCGATTAAGAGGAGAGGCAAAGGTGTAGCAATTGTTTGGTTTAGGAATGATCTGAGAGTTCTGGACAATGAGGCTTTATATAAAGCCTGGATTTCCTCCGAGACCGTGCTGCCGGTGTATTGCATTGATCCTCGGCTATTTGGCACTACCTATTACTTTGGATACCCGAAAACTGGCGGTGGTTACCCGTTATATTACTTCCAATATCTCAATCAACTCAATTTTCTCCCAAACTCCTACTTGAAAAGACAATACCTCAAGTGGATTTCGTTGCTGTTTTTTCAGATCAATAAGCTCTTGTTGAAATTACTGATCATATCAGCAGTTATTGTATCAATGTACATGTTGTACGTTTACGAGTTCATAGATTATGTGGATGCTTCATTTTGTTCCTTGGCAGCTCTTAGAGCGCAGTTCCTTATTGAATGCCTGACTGATCTGAAGAGGAACTTAATCAAGCGGGGTCTGAACTTGCTCATTCAACAGGGAAAGCCTGAAGATATTATCCCCTCTCTCGCGAAAGCTCACGGTGCTCATACAGTCTATGCCCAACAAGAAACTTGCAGTGAGGAGCAAAAGGTCGAAAGAGCTGTTATCAAAGCTCTTCAGAATGTGGGGTTACGACCATCACAAGATCAGTCAACCAATCAAAGGTCAAAAAGCAGCCCGAACTTGCATCTTGTTTGGGGCACCACTTTATACCACATAGAAGATCTCCCATTCACCACTAGCAATTTACCAGACGTGTATACTCAATTTCGAAAGTCTGTTGAAACCAAAAGCACGGTTAGAGGGTGCATCAAAGTTCCGGTTTCTCTCGGGCCTCCTCCAAACATTGACGAATGGGGATGTGTTCCATCACTGGATCAAATAGGGCTTCAGCCTACAAATGTTATGAGAGGTATGAAGTTCATCGGTGGCGAGAGTGCTGCACTCAGCAGAATAAATGAATATTTCTGGAAGAAGGATTTGTTGAAGATATATAAAAGTATAAGGAATGGGATGTTAGGTCCTGATTACTCAACAAAGTTTTCACCATGGCTTGCTTCAGGAAGCGTCTCAGCCCGGCTAATCCATGAAGAGGTTAGGAGATTCGAAAAGGAATGTATAGCAAATGAATCCACATACTGGGTTCTTTTTGAATTGATATGGAGGGATTACTTCAGGTTTCTTTCACTCAAATATGGGAATTCCCTTTTTCATCTCGGTGGTCCTAGAAAATTGCAGTTGAGTTGGAGTCAAGACAAGAATATGTTTGAGTTATGGAGAGATGGACGGACTGGATACCCTCTTATTGATGCTAACATGAAAGAACTATCAGCGACTGGCTTCATGTCGAACCGAGGACGACAGATTGTGTGCTCCTTTCTTGTTCGAGATATGGGTATTGATTGGCGTATGGGAGCTGAATGGTTTGAGACTTGCCTTTTGGATTATGACCCATGCTCTAATTATGGAAATTGGACCTACGGAGCAGGAGTTGGTAATGACCCCAGGGAAGATCGTTATTTCAGCATACCCAAGCAGGCCCAAACTTATGATCCCGAGGGAGAATATGTTGCTTACTGGTTGCCTCAGCTAAGAATGTTACCCAAAGACAAGAGGAACTTCCCTGGAAAATCTTACATTGAACAAGTTGTTCCTCTCAAGTATGGCAGTGTGGGAAGACGTCAAAATCAAAACACAGCTTCGACTGAGAAAAGAAATTCAGGAGGGAGACAAACGAGAATATACAGGAGATAG 2010 43.48 LHTRFIRLINPMASLWVTLPSLSLAKKFFPAERIRFGPSIRFQIMNSISDSTSVSPSSSPFQVPGLDSDQIDRIAEQTFQRYSLPSSSSSIKRRGKGVAIVWFRNDLRVLDNEALYKAWISSETVLPVYCIDPRLFGTTYYFGYPKTGGGYPLYYFQYLNQLNFLPNSYLKRQYLKWISLLFFQINKLLLKLLIISAVIVSMYMLYVYEFIDYVDASFCSLAALRAQFLIECLTDLKRNLIKRGLNLLIQQGKPEDIIPSLAKAHGAHTVYAQQETCSEEQKVERAVIKALQNVGLRPSQDQSTNQRSKSSPNLHLVWGTTLYHIEDLPFTTSNLPDVYTQFRKSVETKSTVRGCIKVPVSLGPPPNIDEWGCVPSLDQIGLQPTNVMRGMKFIGGESAALSRINEYFWKKDLLKIYKSIRNGMLGPDYSTKFSPWLASGSVSARLIHEEVRRFEKECIANESTYWVLFELIWRDYFRFLSLKYGNSLFHLGGPRKLQLSWSQDKNMFELWRDGRTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRMLPKDKRNFPGKSYIEQVVPLKYGSVGRRQNQNTASTEKRNSGGRQTRIYRR 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 529938 535006 + Bda015976.2 Bda03g00042 3301

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00042 669 MobiDBLite consensus disorder prediction 643 669 - -
Bda03g00042 669 Gene3D HUPs 60 163 IPR014729 -
Bda03g00042 669 Gene3D HUPs 186 319 IPR014729 -
Bda03g00042 669 PRINTS DNA photolyase signature 536 554 IPR002081 -
Bda03g00042 669 PRINTS DNA photolyase signature 575 589 IPR002081 -
Bda03g00042 669 PRINTS DNA photolyase signature 516 532 IPR002081 -
Bda03g00042 669 Pfam DNA photolyase 99 134 IPR006050 -
Bda03g00042 669 Pfam DNA photolyase 220 351 IPR006050 -
Bda03g00042 669 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 390 625 IPR036134 -
Bda03g00042 669 PANTHER CRYPTOCHROME DASH 88 149 - -
Bda03g00042 669 TIGRFAM crypto_DASH: cryptochrome, DASH family 186 615 IPR014133 GO:0003913|GO:0006281
Bda03g00042 669 MobiDBLite consensus disorder prediction 643 660 - -
Bda03g00042 669 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 212 372 IPR036155 -
Bda03g00042 669 Pfam FAD binding domain of DNA photolyase 469 627 IPR005101 -
Bda03g00042 669 PANTHER CRYPTOCHROME 88 149 IPR002081 -
Bda03g00042 669 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 490 644 - -
Bda03g00042 669 PANTHER CRYPTOCHROME DASH 195 653 - -
Bda03g00042 669 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 97 304 IPR006050 -
Bda03g00042 669 Gene3D - 320 489 - -
Bda03g00042 669 PANTHER CRYPTOCHROME 195 653 IPR002081 -
Bda03g00042 669 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 96 163 IPR036155 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00042 K25656 cry, CRYD; cryptochrome - jre:109009591 747.658
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00042 Bda-Chr3:529938 Bda05g00361 Bda-Chr5:47855365 3.28E-11 dispersed
Bda03g00042 Bda-Chr3:529938 Bda12g00086 Bda-Chr12:667230 2.64E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g224 . Blo12g00706 . Bda03g00042 . . Bma04g00041 . . . Cma01g01604 . Car09g00443 . . . Cpe06g00379 . . . . . . . Cla05g01785 Cam05g1904 Cec05g1915 Cco05g1978 Clacu05g1897 Cmu05g1778 Cre05g1906 Cone4ag1845 Cone7ag1751 . . . Csa03g04387 Chy04g00315 . . . . . . Bpe04g00031 . . Sed09g1246 Cmo01g01651 Cmo09g00506 Cma09g00556 . . . . Cpe02g00374 Bhi09g02328 Tan01g3711 Cmetu01g0800 . Hepe01g2073 Mch11g0610 . . . . . . . . . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007699 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 36