Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00046 ATGGAGTCGACCGTGGATGAGATGTTGAACCATACTCAAGGTGATGGTGAAGCTTCGACACCCCTTACTGCAGTGGCGGAATCTCAATCACAGTCTCATGCTGGAGAAGAAGAAGTAAAAGAAGAGGAAGAAGAATTAAATGAGGATGGCGAGTTGATAGCCAAAGCTCAGAAGTTGATGGAGAAGATCACTTCTTCACCCGACAATCCTAACCCCACTGTCCTTCACGCTCTCGCCTCGCTCTTTGAAACCCAAGAGTCTCGGTATATGGAGGAGAATGGTTCATCCTCTAGCAATGGTCGTGCATCTCACAGCATTGGAAAGCTTGGGAATGTAGTTCGGGATAATGATGAGTTTTTCGAGTTGATATCTTCTAAGTTTCTAGTAGAAACCAGATATTCGATGTCTATTCAAGCAGCTGCTGCAAGACTTTTATTAGGCTGTTCATTAACTTGGATGGTATCTTTTTCTTATCTTATCAGTTATACATTGAATTTGACTAGCTATACTGGATTGCAGTATCCTCATATTTTTGAAGAAGACGTAATAGATAACATTAAAAAATGGGTGATGGAAGATGTTGCAAGACTTTCTGCTGAAGACCGGAATTGGAAGCTTGATTTGGGAGAGCATGAAGTTTCTGATTCTGAAATGTTGCGGACGTATTCTACTGGACTTCTTGCTGTATGTTTGGCAGGTGGGGGCCCATTGCTAGAAGATGTATTGACATCTAGGTTGTCTGCCAAACTAATGCGCTATCTTCGTATTCGAGTACTTGGAGATACAAGTCAGAAAGACGTTATTCATTTGATAGATACTAAGATTCCATCTGGTACCAGTGGAATGAAGAGTAGGGAAGAAAGTCGGGTGAGAGCTCGGCAGGTTCATGAAACATCACATTTTGATGATTTGAGGGTTGCTGGTGAGAGATCTTTGGACGAACAAAGTTTTGGTAAGCCTCTTCATGATGAAGAACGCTGGATTGAAGGTGGAGAAGGTCCTGAGGAGTTGGCTGAAGGGGTTGATTTTTATGGAATTGATGCAGATGAGGAGAACAGGTGGAAAACTCGAGATTTGCGTGATGAGAGGACAAAATGTGGTGATCTTGATGATAATGCAAGAGACGACACAGCAAGACGGAGGCTAAACCGTGGAAGGACCAGAGGAAAAGGAAAGGGTAATGAAGGTTCTGTTGATACTGACCAGATTTTAACCTCACCCAGTTCTGGTAACCAATGTCGAAATGCAAGAGAAAGGAGTTTGTTAAGAAATCCAGATGTAAAGAAATTACATGACACAAGTAAGAATTCAAGCAGGATTAATACTGATTCTATGGCTTTCGAGAGAGAGGAAACTGACGATTGCTTCCTGGAGTGTAAAATTGGAACTATGTATATTTCAGACATGGTTAAGAAAGCAGTTAGAGCAGCTGAAGCTGAAGCCAGAGCAGCTGATGCACCTTTGGAAGCCATTAAAGCTGTTGGCGATGCTGCTGCCGAAGTTGTCAAAAGTGCAGCTTTAGAGGAATTTAAGACTTCCAATAATGAACAAGCTGCAGTTTTGGCTGCTTCTAGAGCAGCATCTACTGTAATTGATGCAGCCAACGCCATTGAGGTTTTCAGGGGGTTGAACAGTGAAAATGATGGTTTAAGTAATATAGTTGATGTCTTTGAAAAGGAATTAAATGAGGTTGTTGAAGAGTTTTTTATCCCAAATACCGAGTCCCTTGCTCAGCTTAGAGAAAAATACTGTATTCAGTGCCTTGAGATACTTGGGGAATATGTTGAAGTTTTGGGACCTGTTCTGCGTGAAAAGGGTGTAGAAGTGTGCCTTACACTTCTGCAAAGGAGTTCTAAACATAATAGCACGTTGAAAATGGGAATGTTTTTGCCTGACGTGATGAAGTTAATTTGTGCTTTGGCTGCTCATCGGAAGTTTGCTGCATTGTTTGTTGATCGGGGCGGAATACAGAAGCTACTTGCTGTCCCAAGAGTTGGTCATAGCTGGTTTGGTCTTTCTTCATGCTTATTCACGATTGGTTCTCTTCAGGGGATAATGGAGCGTGTCTGTGCCCTTCCTTCAGATATTGTCAATCAGGTGGTTGAGTTAGCTATTCAACTTCTTGAGTGTCCCCAAGATCAAGCAAGAAAAAATGCAGCCTTATTTTTTGCTGCTGCATTTGTTTTTAGAGCGGTTCTTGATGCTTTTGATGCACAAAATGGTTTACAAAAAGTACTTGGGCTTTTAAATGAGGCTGCGTCTGTGAGGACGGGGGTAAATTCTGGGACATTAAACTTTCCTAGTACAGGATCAACGAGGAATGAGAGATCAGCATCAGAAGTATTGACATCCTCTGAGAAACAGATAGCTTATCACACTTGCGTTGCTTTACGACAATATTTCAGAGCGCATCTGCTCTTGCTTGTTGAGTCTATTCGCCCAAATAAGAATAGTCGAAGTGCCACTCGAAATATTCCTAGTGTACGGGCTGTGTACAAGCCACTTGACATTAGCAATGAGGCTCTGGATTCAGTTTTTCTACTGTTACAGAAGGATAGGAAGCTTGGGGCTTCGTTTGTAAGATCCCGATGGCCTGCTGTTGAGAAGTTTTTGAGTGCTAATGGACATATAATAATGTTGGAGTTATGTCAGGCGCCACCAGTGGAACGTTACTTGCATGATCTGCTTCAATATGCGTTGGGTGTTCTTCACATCGTTACATTGGTACCTAACAGCCGTAGGATGATTGTGAATGCCACATTGAGCAATAATCGGGTTGGTATAGCAGTCATTTTGGATGCAGCTAGTGTCGCCAGTAACTTTGTGGATCCTGAGATCATTCAACCAGCATTAAACGTGTTGATTAATCTTGTTTGCCCTCCACCTTCAATCAGCAATAAGCCATCTTTATTGCCACAAGGTCAGCTGTCTGTTTCTGCTTTCACCTCTGTAGGCCCTGCTTTGGACACTAGAGATAGAAATGCAGATCGCAATGCCTCAGATCAAGCTGTTTATGTGTCTAGCCAGGGTGATCACAGAGAAAGGAACGGGGAGTCTAATTATGTAGAAAGAAGCTCTACTTGTTCACTGGCTACTAGTAACAATACACAGACCCCTGTTTCAAAAGCAGCTTCAGGATTAGTGGGTGATCGTAGAATAACCTTAGGTGCTGGGGCAGGTTGTGCTGGCCTTGCTGCGCAGTTGGAACTGGCTTATCGTCAAGCAAGAGAGGCTGTCCGTGCCAACAATGGTATCAAGGTTCTACTACACCTCCTGCAGCCCAGAATTTATTCACCTCCCGCAGCTCTTGACTGTCTTCGTGCACTGGCATGTCGCGTGCTTCTAGGTTTGGCTAGAGATGATACTATCGCCCATATATTAACAAGGCTGCAGGTAAACGTTTGTTTTGTGTTGTCTTTGGCTTTTTCCATACTGATATTTTGGCTTACTGTTCTTCAACATTATTATCAATTATATAAACTGCTACTTGACCTTATTGTAACAAACTCAGGTCGTGCGAGTGCATTAGCAGCTAGTGATGCTGCTACACCTACTTTGAGACGCATAGAAAGAGCAGCCATTGCTGCTGCCACTCCTATCACTTACCACCCCAGGGAACTTTTGCTCTTAATTCACGAGCACCTGCAGGCATCTGGGATGGCCACAACTGCTGTTGCACTTCTGAAAGAGGCTCAGCTGACACCTTTGCCATCCTTAGCGGCCCCATTGTCCATTGGATACCAATCCTCCGTGCAAGATGTCCTGTCAGTACTGCCTCAGTGGCCTTCTGGTCGGTCCCAAGGTGGGTTGCTCACTGGGAAAGCGAAGCCAACTGTACGGGCAGATGAATCGATCTTAAAATGTGACTCAACTTACTCGATTTCAAAGAAAAAGCCTTTGGTTTTCTCTCCCTCTTTTGGTTTGTACCATAGAAGCCACCCTAAATCCATTGACTCACACCCACCATCAACGAGGAAGGTACCTACCATAAAACAACCTTCTGTAACTGCAGGCGCATCACAAACTCTTTCAGAACTCTCACAGAAATCAAATGCTGATGCGGAGGCTCATTGTAAAACACCAGTTGTATTGCCGATGAAACGGAAGTTGTCTGAGCTTAAGGATAATGGCAGTTTGTCTTCCTCCTTGAAGCGACTCAATACCTGCGAGCAAGGATTTTCGTCCCCAATTTGTTTAACTCCCAGTTCCTTGCGAAAAAGTGGTTTTGCAGCTGATGTTGAGTTTTCACCAAATGCTTACCCAAAAGATCACCAGGGACGACCAACAACTGGTTGCCTGGCAGATAATTTGGATGACGTTCTAAACTCGAACTTTCACATTGGTGGTCAGGTCACACCAGCGGCCCATTCTGGAGCTCCAAATGACCCTCAGCCTAGCACCACAGAGAGATTAACGTTAGACTCACTTGTTGTTCAGTACCTAAAACACCAGCATCGGCAATGTCCGGCACCCATAACAACTCTGCCTCCTCTCTCTCTGCTAAACCCTCATATTTGCCCTGAACCCAAACGAAGCCTTGATGCCCCATTGAACATTACAGCTCGCCTTGGTTCTCGTGAGTTTAGAAATGTTGGTGGGGTACATGGAAGTCGTCGGGATCGTCAGTTTGTTTACAGCAGATTTAGGCCATGGAGAACTTGTCGGGATGATGTTGGTGCTCTTTTAACATGTATCTCTTTTCTCGCAGACTCATCTCATGTGGTAGTTGGTAGTCACTCAGGAGAGATAAAAGTTTTTGAAAGCAATAGCAACAGTGTGATAGAAAGTTGCACTAGCCACCAGTCCCCTCTGACACTTGTTCAGTCATATCGCACTGGTGAGACGCAACTGTTGCTTTCTTCGAGCTCACAGGATGTGAGGTTGTGGGATGCATCTTCAGTATCTGGCGGACCCATGCATTCTTTTGAAGGATGCAAGGCTGCAAGGTTTAGCAATTCTGGGAACACTTTTGCAGCCATGTCAACAGAGATTTCCCAGCGTGAAATTCTCTTATATGATATTCAAACCTCCAATTTGGAGTTAAAATTATCTGACACATCCCTTAATTCTACTGGTCGTGGGCATATTTATTCCCTAGTGCATTTTAGCCCTTCTGATTCAATGCTGCTATGGAATGGAGTCCTGTGGGACAGACGGGTTTCAGGACCAGTCCACCGATTTGATCAGTTTACTGACTATGGGGGTGGTGGTTTTCACCCAGCTGGAAATGAGGTTATTATAAACTCTGAAGTCTGGGATCTTCGGAAGTTCAGGCTCCTCCGAAGTGTACCTTCTCTAGATCAAACATCACTAACATTTAATGCACGTGGGGATGTAATATATGCAATCTTGAGGAGAAATCTAGAGGATGTAATGTCAGCAGTTCACACTCGACGAGTTAAGCACCCCCTTTTCGATGCCTTCCGCACCATTGACGCAGTTAATTATTCTGACATTGCTACGATTCCCTTGGATCGATGTGTCCTTGACTTTACAACGGAGCAAACTGATTCATTTGTTGGGTTGATTACTTTGGATGATCAACAAGAGATGTTTTCATCTGCTAGGGTATATGAAATTGGTCGCCGAAAGCCTACTGATGATGACTCTGATCCAGATGATGCAGAGAGTGAGGAGGACGAAGATGATGAGGACGATGATGATGTGGATATGGACGTCATTTTGGGCCATGATATTGATGGAGATGATCACAGTGATCCAGATGATCTCAGCGATGACGATGACAGCGTGAGTGAGCTCGATGATGATGATGATGATGATGATGGAGATTTCATCATGAATGGTGTTGACTTAGATGGCGGGGCTGGAATTTTAGAAAATGACACCGAGGGTGAGGAGGATGGCCATCGTGCCGGATCTTTCAGTAGCGAGGACGAGGATATTTTCGATGGTAACTTTTTTGGCTATTAA 5931 44.02 MESTVDEMLNHTQGDGEASTPLTAVAESQSQSHAGEEEVKEEEEELNEDGELIAKAQKLMEKITSSPDNPNPTVLHALASLFETQESRYMEENGSSSSNGRASHSIGKLGNVVRDNDEFFELISSKFLVETRYSMSIQAAAARLLLGCSLTWMVSFSYLISYTLNLTSYTGLQYPHIFEEDVIDNIKKWVMEDVARLSAEDRNWKLDLGEHEVSDSEMLRTYSTGLLAVCLAGGGPLLEDVLTSRLSAKLMRYLRIRVLGDTSQKDVIHLIDTKIPSGTSGMKSREESRVRARQVHETSHFDDLRVAGERSLDEQSFGKPLHDEERWIEGGEGPEELAEGVDFYGIDADEENRWKTRDLRDERTKCGDLDDNARDDTARRRLNRGRTRGKGKGNEGSVDTDQILTSPSSGNQCRNARERSLLRNPDVKKLHDTSKNSSRINTDSMAFEREETDDCFLECKIGTMYISDMVKKAVRAAEAEARAADAPLEAIKAVGDAAAEVVKSAALEEFKTSNNEQAAVLAASRAASTVIDAANAIEVFRGLNSENDGLSNIVDVFEKELNEVVEEFFIPNTESLAQLREKYCIQCLEILGEYVEVLGPVLREKGVEVCLTLLQRSSKHNSTLKMGMFLPDVMKLICALAAHRKFAALFVDRGGIQKLLAVPRVGHSWFGLSSCLFTIGSLQGIMERVCALPSDIVNQVVELAIQLLECPQDQARKNAALFFAAAFVFRAVLDAFDAQNGLQKVLGLLNEAASVRTGVNSGTLNFPSTGSTRNERSASEVLTSSEKQIAYHTCVALRQYFRAHLLLLVESIRPNKNSRSATRNIPSVRAVYKPLDISNEALDSVFLLLQKDRKLGASFVRSRWPAVEKFLSANGHIIMLELCQAPPVERYLHDLLQYALGVLHIVTLVPNSRRMIVNATLSNNRVGIAVILDAASVASNFVDPEIIQPALNVLINLVCPPPSISNKPSLLPQGQLSVSAFTSVGPALDTRDRNADRNASDQAVYVSSQGDHRERNGESNYVERSSTCSLATSNNTQTPVSKAASGLVGDRRITLGAGAGCAGLAAQLELAYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTRLQVNVCFVLSLAFSILIFWLTVLQHYYQLYKLLLDLIVTNSGRASALAASDAATPTLRRIERAAIAAATPITYHPRELLLLIHEHLQASGMATTAVALLKEAQLTPLPSLAAPLSIGYQSSVQDVLSVLPQWPSGRSQGGLLTGKAKPTVRADESILKCDSTYSISKKKPLVFSPSFGLYHRSHPKSIDSHPPSTRKVPTIKQPSVTAGASQTLSELSQKSNADAEAHCKTPVVLPMKRKLSELKDNGSLSSSLKRLNTCEQGFSSPICLTPSSLRKSGFAADVEFSPNAYPKDHQGRPTTGCLADNLDDVLNSNFHIGGQVTPAAHSGAPNDPQPSTTERLTLDSLVVQYLKHQHRQCPAPITTLPPLSLLNPHICPEPKRSLDAPLNITARLGSREFRNVGGVHGSRRDRQFVYSRFRPWRTCRDDVGALLTCISFLADSSHVVVGSHSGEIKVFESNSNSVIESCTSHQSPLTLVQSYRTGETQLLLSSSSQDVRLWDASSVSGGPMHSFEGCKAARFSNSGNTFAAMSTEISQREILLYDIQTSNLELKLSDTSLNSTGRGHIYSLVHFSPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSLTFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFDAFRTIDAVNYSDIATIPLDRCVLDFTTEQTDSFVGLITLDDQQEMFSSARVYEIGRRKPTDDDSDPDDAESEEDEDDEDDDDVDMDVILGHDIDGDDHSDPDDLSDDDDSVSELDDDDDDDDGDFIMNGVDLDGGAGILENDTEGEEDGHRAGSFSSEDEDIFDGNFFGY 1976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 547743 556643 + Bda015980.1 Bda03g00046 3305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00046 1976 MobiDBLite consensus disorder prediction 1857 1976 - -
Bda03g00046 1976 MobiDBLite consensus disorder prediction 1 48 - -
Bda03g00046 1976 MobiDBLite consensus disorder prediction 364 419 - -
Bda03g00046 1976 PANTHER VPRBP PROTEIN-RELATED 41 1010 IPR033270 GO:0016567
Bda03g00046 1976 MobiDBLite consensus disorder prediction 987 1021 - -
Bda03g00046 1976 MobiDBLite consensus disorder prediction 1905 1933 - -
Bda03g00046 1976 MobiDBLite consensus disorder prediction 1871 1893 - -
Bda03g00046 1976 PANTHER VPRBP PROTEIN-RELATED 1030 1298 IPR033270 GO:0016567
Bda03g00046 1976 PANTHER VPRBP PROTEIN-RELATED 1295 1858 IPR033270 GO:0016567
Bda03g00046 1976 PANTHER BNAA03G51310D PROTEIN 1295 1858 - -
Bda03g00046 1976 MobiDBLite consensus disorder prediction 364 395 - -
Bda03g00046 1976 SMART WD40_4 1590 1630 IPR001680 GO:0005515
Bda03g00046 1976 SMART WD40_4 1547 1587 IPR001680 GO:0005515
Bda03g00046 1976 SMART Lish 1203 1235 IPR006594 GO:0005515
Bda03g00046 1976 Coils Coil 25 59 - -
Bda03g00046 1976 ProSiteProfiles LIS1 homology (LisH) motif profile. 1203 1235 IPR006594 GO:0005515
Bda03g00046 1976 PANTHER BNAA03G51310D PROTEIN 1030 1298 - -
Bda03g00046 1976 PANTHER BNAA03G51310D PROTEIN 41 1010 - -
Bda03g00046 1976 SUPERFAMILY WD40 repeat-like 1561 1782 IPR036322 GO:0005515
Bda03g00046 1976 SUPERFAMILY ARM repeat 573 1093 IPR016024 -
Bda03g00046 1976 MobiDBLite consensus disorder prediction 1 32 - -
Bda03g00046 1976 MobiDBLite consensus disorder prediction 1949 1964 - -
Bda03g00046 1976 MobiDBLite consensus disorder prediction 398 418 - -
Bda03g00046 1976 Gene3D - 1548 1872 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00046 K11789 DCAF1, VPRBP; DDB1- and CUL4-associated factor 1 [EC:2.7.11.1] - zju:107411159 2359.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00713 Bda-Chr1:34415585 Bda03g00046 Bda-Chr3:547743 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g259 . . . Bda03g00046 . . Bma04g00046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005904 2 1 2 2 2 1 2 1 2 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda03g00046 Bda_Chr03 FPKM 12.08081 14.261329 12.528547 13.717439 13.584408 12.438193 12.755307 23.807821 20.074986