Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00048 ATTATGTCGTCGCCGGAAACTAGGTCGCCGTTACCATTGCTTTTCAGGAGAAATTCAAGCGGGGAAGTAAAAAACTTGACGTCCGTTTCGAGTAGCCTCTTACCGGCGTTCGGAACAGTGGTTGATGAAGGATATTTACACCTCAGAAAATTCATTATCGTTCCCTATGATCGTAGATATCGGTTATGGCAGACCTTCCTAGTTGTGCTGGTGGTGTACTCAGCCTGGGCATCTCCTTTCGAACTAGCCTTCAACAAGGTGGCAACTGGATCTCTTCTACCCGTTGATTTGGCTGTCAATGGATTCTTTGCCATTGATATAGTCTTAACTTTCTTTGTCGCTTACTTGGACAAATCAACCTATCTCCTCGTTGATGATCATAAGAAGATAGCTAAAAGGTACGTTACGAGCATGTGGTTCACTATGGATGTTGCTTCGTCCCTTCCTTATCAAATAATATACAAAATTATCACAGGAAACTTGCACCGTGGTGAGACCTTTGGTTTCCTCAACTTTCTGCGCTTATGGCGACTTAGGCGTGTTAGTCAACTCTTTTCTAGGCTGGAGAAAGATACACGCTTTAGCTACTTTTGGACAAGGTACTGCAAACTAATTTGTGTGACGTTGTTTGCAGTGCATGCAGCAGGGTGCTTTTACTTTTGGATGGCAACTCGTTATAAATCCTCTCAAAACACATGGATTGGACTGGATGTCCCGAACTTTGAGCAGCAAAGCATTTGGCTCTGCTACACTTACTCCATGTACTGGTCCATCGTCACCTTAACTACAGTAGGCTATGGTGACTTGCACGCAGTCAACATTGGGGAGAAGATATTCAGCATCTTCTACATGCTCTTCAACATTGGTCTCACGGCTTATTTGATCGGCAACATGACCAATCTCATCGTCCACAGTGCTGCTCGAACCTTTGCCATGAGAGATGCAATCAATGAGATACTTACATATGCAAGCAAGAGTAGACTCCCAGAAGGGTTGAAGGGCCAGATGCTGGCACACATGCAGCTCAAGTTCAAGACAGCGGAGCTGCAGCAAGAAGAAGTGCTTGGGGACTTGCCTAAAGCAATAAGATCGAGCATTGCTCAGCACCTGTTTCGAAGAACAGTGAAAGATTCATACCTATTCAAGGGAGTCTCAGAAGATCTCATTGTGCAATTGGTATCAGAGATGAAAGCTGAATATTTTCCGCCCAAAGTGGAAATTATATTGCAGAACGAGATACCTACAGATTTCTACATTTTGGTGTCTGGATCAGTGGACTTGTTGTCATACAAAAATGGAACAGAACAGTTTTTAGCAAATATGGGACCTGGAGACATGGTAGGAGACATAGCGGTACTGTTTAATATTCCACAAACTTTCACAGTGAGAACAAAGAGGCTTTCTCAAGTTGTGCGCGTCAGTCATCATCATTTCAAGCAAGTGGTACAACCACACAATGATGGAAAGACAATCATCTCTAACTTCATACAGTATTTGAAGGGTTTGAGAAAAGAGTTGCTAGAAGAAATACCACATCTCACAGACTTGCTGGGCGACTTGAATAAAGAGGTTTTTTTTCCATAG 1584 43.18 IMSSPETRSPLPLLFRRNSSGEVKNLTSVSSSLLPAFGTVVDEGYLHLRKFIIVPYDRRYRLWQTFLVVLVVYSAWASPFELAFNKVATGSLLPVDLAVNGFFAIDIVLTFFVAYLDKSTYLLVDDHKKIAKRYVTSMWFTMDVASSLPYQIIYKIITGNLHRGETFGFLNFLRLWRLRRVSQLFSRLEKDTRFSYFWTRYCKLICVTLFAVHAAGCFYFWMATRYKSSQNTWIGLDVPNFEQQSIWLCYTYSMYWSIVTLTTVGYGDLHAVNIGEKIFSIFYMLFNIGLTAYLIGNMTNLIVHSAARTFAMRDAINEILTYASKSRLPEGLKGQMLAHMQLKFKTAELQQEEVLGDLPKAIRSSIAQHLFRRTVKDSYLFKGVSEDLIVQLVSEMKAEYFPPKVEIILQNEIPTDFYILVSGSVDLLSYKNGTEQFLANMGPGDMVGDIAVLFNIPQTFTVRTKRLSQVVRVSHHHFKQVVQPHNDGKTIISNFIQYLKGLRKELLEEIPHLTDLLGDLNKEVFFP 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 613252 617360 + Bda015983.1 Bda03g00048 3307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00048 527 Gene3D Jelly Rolls 348 510 IPR014710 -
Bda03g00048 527 Gene3D - 61 304 - -
Bda03g00048 527 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 62 523 - -
Bda03g00048 527 PANTHER POTASSIUM CHANNEL, VOLTAGE-DEPENDENT, EAG/ELK/ERG-RELATED 3 61 - -
Bda03g00048 527 CDD CAP_ED 380 485 IPR000595 -
Bda03g00048 527 SMART cnmp_10 380 497 IPR000595 -
Bda03g00048 527 Pfam Cyclic nucleotide-binding domain 400 483 IPR000595 -
Bda03g00048 527 PANTHER POTASSIUM CHANNEL AKT1 62 523 IPR045319 GO:0005249|GO:0006813
Bda03g00048 527 PANTHER POTASSIUM CHANNEL AKT1 3 61 IPR045319 GO:0005249|GO:0006813
Bda03g00048 527 ProSiteProfiles cAMP/cGMP binding motif profile. 380 487 IPR000595 -
Bda03g00048 527 SUPERFAMILY cAMP-binding domain-like 308 487 IPR018490 -
Bda03g00048 527 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda03g00048 527 PRINTS EAG/ELK/ERG potassium channel family signature 276 287 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda03g00048 527 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda03g00048 527 PRINTS EAG/ELK/ERG potassium channel family signature 294 303 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda03g00048 527 PRINTS EAG/ELK/ERG potassium channel family signature 250 267 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bda03g00048 527 SUPERFAMILY Voltage-gated potassium channels 55 303 - -
Bda03g00048 527 Coils Coil 503 523 - -
Bda03g00048 527 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01133 Bda-Chr1:46235114 Bda03g00048 Bda-Chr3:613252 2.65E-90 dispersed
Bda02g00458 Bda-Chr2:45340521 Bda03g00048 Bda-Chr3:613252 3.79E-166 dispersed
Bda03g00048 Bda-Chr3:613252 Bda09g01174 Bda-Chr9:42587681 0 dispersed
Bda01g00717 Bda-Chr1:34445562 Bda03g00048 Bda-Chr3:613252 0 wgd
Bda02g00295 Bda-Chr2:42112849 Bda03g00048 Bda-Chr3:613252 5.52E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00048 K21867 - qsu:111998260 834.713