Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00050 ATGAAGAAAAAGATTCACTTTCTCCTCTTTTCCACTCTAGTTTTGCTATTTTCTCCGGCCAATTCTCAACAACAACCTGTTTTTGATTTCCACGATGCGGAAATCGAGGTGCCGTTCTCGCTAGTCTTCGAAAATCCACGAATCAAGAAGGCTTATATTGCCCTCCAAGCATGGAAGCAAGCAATCGTCTCCGATCCCTTCAACCTGACCTCCAACTGGGTGGGATCCGACGTCTGCAACTACACAGGGGTTTTCTGCGCCCAAGCTCTCGACGACCCTTCCATCCAAACCGTTGCCGGCATTGATCTGAATCACGGCGACATTGCCGGGTATCTTCCTGAAGAGCTTGGATCGCTATCTGATATTGCGTTGTTTCACGTAAACTCCAATCGATTTTGCGGCAGAGTTCCCAGAAGTTTTCGGGAGTTGAAGCTTCTCTTCGAGCTTGACCTCAGCAACAACCGACTTGCAGGGAGGTTCCCTGACGTTGTCATTGATCTGCCAAACATAAAGTATCTCGATCTTCGGTTCAATGAGTTTGAAGGAAAAGTCCCCAAAGCTCTGTTCGATAAAGATCTTGACGCCATTTTCATCAACCATAATAGATTTGCTTTCGAGCTACCTGATAATCTCGGCAACTCCCCGGTTTCTGTCATTGTTCTTGCGAATAACAAGTTTCACGGATGCATGCCGGCAAGCTTTGGAAACATGTCCAAGACACTGAATGAAGCAATATTAAGGAACAATGGTCTGAGCTCTTGCTTGCCCGAGGAAATCGGAATGGCGAGGAATGTGACGGTGTTCGACGTGAGCTTCAATAATCTTATTGGTGAGCTACCGAAGACAATCGGTGGAATGGTAAGCTTGGAAGAGTTCAACGTGGGGCACAACAAGCTCAGAGGGACTGTCCCTGATAGCCTGTGTTCACTTCCGAAGCTGCAAACGTTAAGCATAAAGAACAATTATTTCACCGGGGAGTCGCCGGCGTGTTTCGATCTGCAGAAGTTCGACGACGCCCGGAATTGCTTGCGTGATAGGTCTCATCAAAGATCCACTCTGCAATGTAAAGTATTTTTATCCACGCCTGCTAATTGCAGTGCCTTGGAATGTAAATCCTTTGTTACATCTCCTCCGCCTCCACCTCCACCTCCTCCCCCATCTCCTCCTCCGCCTTCACCGCCTCCCCCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCTCCCCTCCTCCTCTCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCAGTCTCCATCTCCTCCCCCGCCTTCACCCCCATCTCCTTGTCCGCCTTCACCGCCACCTCCATCTCCACCACCGCCCTCACCACCTCTTTCATGTCCTCCGCCTTCACCACCACCACCACCACCAAAATAG 2385 57.36 MKKKIHFLLFSTLVLLFSPANSQQQPVFDFHDAEIEVPFSLVFENPRIKKAYIALQAWKQAIVSDPFNLTSNWVGSDVCNYTGVFCAQALDDPSIQTVAGIDLNHGDIAGYLPEELGSLSDIALFHVNSNRFCGRVPRSFRELKLLFELDLSNNRLAGRFPDVVIDLPNIKYLDLRFNEFEGKVPKALFDKDLDAIFINHNRFAFELPDNLGNSPVSVIVLANNKFHGCMPASFGNMSKTLNEAILRNNGLSSCLPEEIGMARNVTVFDVSFNNLIGELPKTIGGMVSLEEFNVGHNKLRGTVPDSLCSLPKLQTLSIKNNYFTGESPACFDLQKFDDARNCLRDRSHQRSTLQCKVFLSTPANCSALECKSFVTSPPPPPPPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPSPCPPSPPPPSPCPPSPPPPSPCPPSPPPPSPPPPSPPPPSPPPPSPPPPSPCPPSPPPPSPPPPSPPSPCPPSPPPPSPCPPSPPPPSPCPPSPPPPSPCPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPSPCPPSPPPPSPPPPSPPPPSPPPPSPPSPCPPSPPPPSPPPPSPPPPSPCPPSPPPPSPPPPSPPPPSPPPPSPPPPSPCPPSPPPPSPPPPSPPPPSPCPPSPPPPSPPPPSPPPPSPCPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPCPPSPPPPSPPPPSPPPLLLSPSPPPPSPPPPSPPPPSPPPQSPSPPPPSPPSPCPPSPPPPSPPPPSPPLSCPPPSPPPPPPK 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 623551 625935 + Bda015985.1 Bda03g00050 3309

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00050 794 SUPERFAMILY L domain-like 52 333 - -
Bda03g00050 794 Gene3D Ribonuclease Inhibitor 52 214 IPR032675 -
Bda03g00050 794 Pfam Leucine rich repeat 263 322 IPR001611 GO:0005515
Bda03g00050 794 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 33 466 - -
Bda03g00050 794 PRINTS Proline rich extensin signature 394 410 - -
Bda03g00050 794 PRINTS Proline rich extensin signature 373 394 - -
Bda03g00050 794 PRINTS Proline rich extensin signature 411 428 - -
Bda03g00050 794 Pfam Leucine rich repeat N-terminal domain 54 86 IPR013210 -
Bda03g00050 794 Gene3D Ribonuclease Inhibitor 217 368 IPR032675 -
Bda03g00050 794 MobiDBLite consensus disorder prediction 374 794 - -
Bda03g00050 794 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 33 466 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00050 - - - qlo:115970762 536.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00050 Bda-Chr3:623551 Bda11g00593 Bda-Chr11:6051484 1.21E-132 dispersed
Bda03g00050 Bda-Chr3:623551 Bda06g00060 Bda-Chr6:618366 2.07E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda03g00230 . 59 413 Leucine-rich Repeat extension Gene Families AT1G62440 62.0 2.0e-54 211.1
Bda03g00050 . 7 273 Leucine-rich Repeat extension Gene Families AT1G62440 51.3 3.0e-42 170.6
Bda09g01162 . 65 233 Leucine-rich Repeat extension Gene Families AT1G62440 69.2 1.9e-41 167.9
Bda09g01162 . 24 401 Leucine-rich Repeat extension Gene Families AT4G13340 72.8 5.2e-60 229.6
Bda03g00230 . 9 263 Leucine-rich Repeat extension Gene Families AT4G13340 64.8 4.6e-56 216.5
Bda03g00050 . 23 378 Leucine-rich Repeat extension Gene Families AT4G13340 59.1 1.5e-43 174.9
Bda11g00593 . 40 368 Leucine-rich Repeat extension Gene Families AT4G13340 68.5 8.7e-39 159.1
Bda09g01162 . 34 401 Leucine-rich Repeat extension Gene Families AT3G24480 73.4 4.4e-68 255.8
Bda03g00230 . 17 412 Leucine-rich Repeat extension Gene Families AT3G24480 61.1 1.0e-56 218.0
Bda03g00050 . 28 377 Leucine-rich Repeat extension Gene Families AT3G24480 56.1 8.4e-43 171.8
Bda11g00593 . 40 368 Leucine-rich Repeat extension Gene Families AT3G24480 65.2 4.3e-39 159.5
Bda11g00593 . 28 370 Leucine-rich Repeat extension Gene Families AT3G22800 69.5 1.7e-56 217.2
Bda03g00230 . 64 394 Leucine-rich Repeat extension Gene Families AT3G22800 64.2 1.1e-47 188.0
Bda03g00050 . 38 378 Leucine-rich Repeat extension Gene Families AT3G22800 63.5 4.1e-47 186.0
Bda03g00050 . 8 378 Leucine-rich Repeat extension Gene Families AT5G25550 66.0 2.5e-59 226.5
Bda03g00230 . 35 406 Leucine-rich Repeat extension Gene Families AT5G25550 53.2 6.5e-39 158.7
Bda09g01162 . 51 403 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.6e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37