Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00050 ATGAAGAAAAAGATTCACTTTCTCCTCTTTTCCACTCTAGTTTTGCTATTTTCTCCGGCCAATTCTCAACAACAACCTGTTTTTGATTTCCACGATGCGGAAATCGAGGTGCCGTTCTCGCTAGTCTTCGAAAATCCACGAATCAAGAAGGCTTATATTGCCCTCCAAGCATGGAAGCAAGCAATCGTCTCCGATCCCTTCAACCTGACCTCCAACTGGGTGGGATCCGACGTCTGCAACTACACAGGGGTTTTCTGCGCCCAAGCTCTCGACGACCCTTCCATCCAAACCGTTGCCGGCATTGATCTGAATCACGGCGACATTGCCGGGTATCTTCCTGAAGAGCTTGGATCGCTATCTGATATTGCGTTGTTTCACGTAAACTCCAATCGATTTTGCGGCAGAGTTCCCAGAAGTTTTCGGGAGTTGAAGCTTCTCTTCGAGCTTGACCTCAGCAACAACCGACTTGCAGGGAGGTTCCCTGACGTTGTCATTGATCTGCCAAACATAAAGTATCTCGATCTTCGGTTCAATGAGTTTGAAGGAAAAGTCCCCAAAGCTCTGTTCGATAAAGATCTTGACGCCATTTTCATCAACCATAATAGATTTGCTTTCGAGCTACCTGATAATCTCGGCAACTCCCCGGTTTCTGTCATTGTTCTTGCGAATAACAAGTTTCACGGATGCATGCCGGCAAGCTTTGGAAACATGTCCAAGACACTGAATGAAGCAATATTAAGGAACAATGGTCTGAGCTCTTGCTTGCCCGAGGAAATCGGAATGGCGAGGAATGTGACGGTGTTCGACGTGAGCTTCAATAATCTTATTGGTGAGCTACCGAAGACAATCGGTGGAATGGTAAGCTTGGAAGAGTTCAACGTGGGGCACAACAAGCTCAGAGGGACTGTCCCTGATAGCCTGTGTTCACTTCCGAAGCTGCAAACGTTAAGCATAAAGAACAATTATTTCACCGGGGAGTCGCCGGCGTGTTTCGATCTGCAGAAGTTCGACGACGCCCGGAATTGCTTGCGTGATAGGTCTCATCAAAGATCCACTCTGCAATGTAAAGTATTTTTATCCACGCCTGCTAATTGCAGTGCCTTGGAATGTAAATCCTTTGTTACATCTCCTCCGCCTCCACCTCCACCTCCTCCCCCATCTCCTCCTCCGCCTTCACCGCCTCCCCCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCTCCCCCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCGCCTCCCCCATCTCCTTGTCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCCTTCACCGCCTCCCCTCCTCCTCTCGCCTTCACCGCCACCACCATCTCCTCCCCCGCCTTCACCGCCACCACCATCTCCTCCTCCGCAGTCTCCATCTCCTCCCCCGCCTTCACCCCCATCTCCTTGTCCGCCTTCACCGCCACCTCCATCTCCACCACCGCCCTCACCACCTCTTTCATGTCCTCCGCCTTCACCACCACCACCACCACCAAAATAG 2385 57.36 MKKKIHFLLFSTLVLLFSPANSQQQPVFDFHDAEIEVPFSLVFENPRIKKAYIALQAWKQAIVSDPFNLTSNWVGSDVCNYTGVFCAQALDDPSIQTVAGIDLNHGDIAGYLPEELGSLSDIALFHVNSNRFCGRVPRSFRELKLLFELDLSNNRLAGRFPDVVIDLPNIKYLDLRFNEFEGKVPKALFDKDLDAIFINHNRFAFELPDNLGNSPVSVIVLANNKFHGCMPASFGNMSKTLNEAILRNNGLSSCLPEEIGMARNVTVFDVSFNNLIGELPKTIGGMVSLEEFNVGHNKLRGTVPDSLCSLPKLQTLSIKNNYFTGESPACFDLQKFDDARNCLRDRSHQRSTLQCKVFLSTPANCSALECKSFVTSPPPPPPPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPSPCPPSPPPPSPCPPSPPPPSPCPPSPPPPSPPPPSPPPPSPPPPSPPPPSPCPPSPPPPSPPPPSPPSPCPPSPPPPSPCPPSPPPPSPCPPSPPPPSPCPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPSPCPPSPPPPSPPPPSPPPPSPPPPSPPSPCPPSPPPPSPPPPSPPPPSPCPPSPPPPSPPPPSPPPPSPPPPSPPPPSPCPPSPPPPSPPPPSPPPPSPCPPSPPPPSPPPPSPPPPSPCPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPCPPSPPPPSPPPPSPPPLLLSPSPPPPSPPPPSPPPPSPPPQSPSPPPPSPPSPCPPSPPPPSPPPPSPPLSCPPPSPPPPPPK 794
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 623551 625935 + Bda015985.1 Bda03g00050 3309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00050 794 SUPERFAMILY L domain-like 52 333 - -
Bda03g00050 794 Gene3D Ribonuclease Inhibitor 52 214 IPR032675 -
Bda03g00050 794 Pfam Leucine rich repeat 263 322 IPR001611 GO:0005515
Bda03g00050 794 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 33 466 - -
Bda03g00050 794 PRINTS Proline rich extensin signature 394 410 - -
Bda03g00050 794 PRINTS Proline rich extensin signature 373 394 - -
Bda03g00050 794 PRINTS Proline rich extensin signature 411 428 - -
Bda03g00050 794 Pfam Leucine rich repeat N-terminal domain 54 86 IPR013210 -
Bda03g00050 794 Gene3D Ribonuclease Inhibitor 217 368 IPR032675 -
Bda03g00050 794 MobiDBLite consensus disorder prediction 374 794 - -
Bda03g00050 794 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 33 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00050 Bda-Chr3:623551 Bda11g00593 Bda-Chr11:6051484 1.21E-132 dispersed
Bda03g00050 Bda-Chr3:623551 Bda06g00060 Bda-Chr6:618366 2.07E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00050 - - qlo:115970762 536.569