Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00056 ATGGCCCACGGCCATACCAATCCTGCGCTGGACCTGTCCAAAGCTTTTTCTCTCCGAAATTTGAAGGTCTCCATTGTAACTACTCCATCCAACGCAGAATACATTGCTCGGAAAACATCAAAGTTCCCAAGCATTTCTATCATCACGATCCCGTTTCCGTCCATCATTGGCCTACCCGACGGCTGCGAGAACACCACCCAACTCCCCTCAGTGGAATCGCATCTCCTCCCTTTCCTTATGGCTACGAAGCAACTCCAGGTGCCGTTCCAACGTTTTTTGCAGATGATGAAGGATTCCGGTGAGCTCCCTCTCTGCGTCATCTCCGATTTCTTTCTGGGTTGGACCCTCGAGGTTTGCCGGAGATTTGGAGTTCCCAGGCTGGTATTCTCCGGAATGGGAGTTTTTTCAATGGCTCTCTGTAAAATTATTTCGACCCGTGCTCCTCATTTGAAAATAACCACCAATTCTGATCCTCTAGACCTACCAGGAATCCAGCTGCCTTTCAGTTTAACTATTGCAGACATTCCTGAGGCTTTGAATTTACCAAATTACGACGATCCATTTTCTCAGTTTACGATGGAGGCCGCCGAGGCAGATGGAAATAGCTGGGGGAACATCGCCAACAGCTTCGTGGAGATGGAAGGCGATTACGTTGCTTCGTTACAGTCCTTTTATAAGAAAGGAGCTAATATCTGGTGCTTAGGTCCTCTCTTCCTATATGACTTATCACTTGAAGAAACCAAGGAGGTCAATCATTATTCTGATTCTCTGGGTCAGTGGCTCGACTGCCATGCGAGAGACAGCCCGGGCTCGGTGATATACGTATCACTTGGGACTCAGTCCGACGTATCAGACGCGCAACTCGACGAACTGGCTCTTGGGTTGGAAGATGAACTCGGTGATGGAGAGCTGTGCGCAGGGGTGCCCATTATACCTATGCCGATGACGGCGGAGCAGCCGTTGAACGCCAAGTTAGTTGTGGAAGGGTTGGGAATGGGGGTTAGAATGGAGAAGGCGAATCATTTGAGCATTGGAGTTGCAGTTTCGAAGGAAGATATTAGCAAGGGCTTAAAAGAGCTGATGGCGGGAGAGAGAGGGAGGAGAGCGCGCCTTGATCAAATGCTATCAACTAACTACATGGAACAGTTGCAGCACGATGTGACTGCAAACATGCGAGGAATTCTGATTGATTGGCTAGTTGAGGTATCCGAAGAATATAAATTGGTTCCTGATACACTTTATCTTACTACAAATATCATTGACCGATTTCTCTCCAAAAAATACCTTGAAAAACAAAAATTGCAACTCCTTGGTGTTACCTGCATGCTAATTGCCTCGAAATATGAAGAAATATGTTCACCACGAGTGGAAGAATTCTGTTTCATTACTGACAGCACTTACACAAAAGAACAGGTATTGGAGATGGAGAGCGAAGTCTTGAACTTATTGCACTTTCAGCTATCAGTTCCTACGGCAAAAACTTTTAAAACTGAATTTAGTTACCTCTTTTATCAGGTTCCTTGTGTCGAATTAGAGTTTTTGGCTAACTATTTAGCAGAGTTGACTCTTGTTGAGTATAAGTTCTTAAAGTTTCTGCCTTCTCTGATAGCCGCATCTGCAGTATTTCTCGCCAAATGGACAATTAATCAATCAAATCATCCTTGGAGTCCAACTCTAGCGCATTATACAACATACAACACTTCAGAGCTGAAAACTACAGTAATTGCCCTCGAAAGTTTACAACTTAACGCTGATGGTTCCTCCTTAAATGCCATTCGTGAGAAGTACAAACAACAAAAGTTCAAATGTGTAGCAACATTCACTTCAGCACAATCAGTCCAAACGCTTTTCTGA 1854 44.88 MAHGHTNPALDLSKAFSLRNLKVSIVTTPSNAEYIARKTSKFPSISIITIPFPSIIGLPDGCENTTQLPSVESHLLPFLMATKQLQVPFQRFLQMMKDSGELPLCVISDFFLGWTLEVCRRFGVPRLVFSGMGVFSMALCKIISTRAPHLKITTNSDPLDLPGIQLPFSLTIADIPEALNLPNYDDPFSQFTMEAAEADGNSWGNIANSFVEMEGDYVASLQSFYKKGANIWCLGPLFLYDLSLEETKEVNHYSDSLGQWLDCHARDSPGSVIYVSLGTQSDVSDAQLDELALGLEDELGDGELCAGVPIIPMPMTAEQPLNAKLVVEGLGMGVRMEKANHLSIGVAVSKEDISKGLKELMAGERGRRARLDQMLSTNYMEQLQHDVTANMRGILIDWLVEVSEEYKLVPDTLYLTTNIIDRFLSKKYLEKQKLQLLGVTCMLIASKYEEICSPRVEEFCFITDSTYTKEQVLEMESEVLNLLHFQLSVPTAKTFKTEFSYLFYQVPCVELEFLANYLAELTLVEYKFLKFLPSLIAASAVFLAKWTINQSNHPWSPTLAHYTTYNTSELKTTVIALESLQLNADGSSLNAIREKYKQQKFKCVATFTSAQSVQTLF 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 687131 695130 - Bda015992.1 Bda03g00056 3315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00056 617 CDD CYCLIN 488 569 IPR013763 -
Bda03g00056 617 Pfam Cyclin, N-terminal domain 372 488 IPR006671 -
Bda03g00056 617 PANTHER GLYCOSYLTRANSFERASE 304 370 - -
Bda03g00056 617 Gene3D - 381 482 - -
Bda03g00056 617 PANTHER GLYCOSYLTRANSFERASE 1 297 - -
Bda03g00056 617 Gene3D Glycogen Phosphorylase B; 247 300 - -
Bda03g00056 617 CDD CYCLIN 391 480 IPR013763 -
Bda03g00056 617 SUPERFAMILY Cyclin-like 371 487 IPR036915 -
Bda03g00056 617 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 370 - -
Bda03g00056 617 Pfam Cyclin, C-terminal domain 490 609 IPR004367 -
Bda03g00056 617 CDD GT1_Gtf-like 1 370 IPR002213 GO:0008194
Bda03g00056 617 PANTHER GLYCOSYLTRANSFERASE 304 370 - -
Bda03g00056 617 PANTHER GLYCOSYLTRANSFERASE 1 297 - -
Bda03g00056 617 SUPERFAMILY Cyclin-like 489 610 IPR036915 -
Bda03g00056 617 Gene3D Glycogen Phosphorylase B; 304 370 - -
Bda03g00056 617 SMART Cyclin_C_2 490 610 IPR004367 -
Bda03g00056 617 SMART cyclin_7 494 579 IPR013763 -
Bda03g00056 617 SMART cyclin_7 397 481 IPR013763 -
Bda03g00056 617 Gene3D - 483 616 - -
Bda03g00056 617 Gene3D Glycogen Phosphorylase B; 1 246 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00056 Bda-Chr3:687131 Bda03g00194 Bda-Chr3:1558109 3.82E-85 dispersed
Bda03g00056 Bda-Chr3:687131 Bda03g00057 Bda-Chr3:696551 8.76E-25 tandem
Bda03g00384 Bda-Chr3:3186601 Bda03g00056 Bda-Chr3:687131 9.91E-170 transposed
Bda01g00725 Bda-Chr1:34532308 Bda03g00056 Bda-Chr3:687131 1.00E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00056 K06627 - rcu:8272367 393.66