Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00060 ATGTCAGGATCAGCAATGGTGGGAGATGCGAGCTCGTGGGCTCACGCAATCGTCAAGATCTCTCCCTATACCTTCTCTGCCGTTGGAATTGCCGTCGCTATCGGTGTTTCCGTTCTCGGCGCCGCCTGGGGGATTTATATAACTGGAAGTAGTTTGATTGGCGCTGCGATCAAAGCTCCACGTATTACTTCGAAGAATTTAATCAGTGTGATATTTTGTGAAGCAGTGGCCATATATGGTGTTATCGTCGCCATCATCTTACAAACAAAGTTAGAAAGTGTTCCAACATCACAAATGTATGCGCCAGAGTCTCTCAGAGCAGGATATGCTATTTTTGCCTCTGGACTTATTGTCGGTTTTGCTAACCTTGTCTGCGGGTTGTGTGTAGGAATAATTGGAAGCAGTTGTGCATTATCTGACGCCCAAAACTCATCTCTTTTTGTGAAGATTCTTGTGATTGAAATCTTTGGTAGTGCCCTTGGGCTATTTGGTGTGATTGTAGGAATCATAATGTCGGCTCAAGCTTCTTGGCCAGCAAGGATTCCATGA 549 45.17 MSGSAMVGDASSWAHAIVKISPYTFSAVGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPTSQMYAPESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQASWPARIP 182
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 702498 703716 + Bda015996.1 Bda03g00060 3319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00060 182 Gene3D - 23 177 IPR035921 -
Bda03g00060 182 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 4 179 - -
Bda03g00060 182 CDD ATP-synt_Vo_c_ATP6F_rpt1 25 87 - -
Bda03g00060 182 PANTHER V-TYPE PROTON ATPASE 21 KDA PROTEOLIPID SUBUNIT 4 179 - -
Bda03g00060 182 Pfam ATP synthase subunit C 112 171 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bda03g00060 182 Pfam ATP synthase subunit C 29 87 IPR002379 GO:0015078|GO:0033177|GO:1902600
Bda03g00060 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 67 91 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bda03g00060 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 123 149 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bda03g00060 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 65 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bda03g00060 182 PRINTS Vacuolar ATP synthase 16kDa subunit signature 150 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Bda03g00060 182 CDD ATP-synt_Vo_c_ATP6F_rpt2 107 171 - -
Bda03g00060 182 SUPERFAMILY F1F0 ATP synthase subunit C 21 90 IPR035921 -
Bda03g00060 182 SUPERFAMILY F1F0 ATP synthase subunit C 104 172 IPR035921 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00869 Bda03g00060 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00060 Bda-Chr3:702498 Bda08g01232 Bda-Chr8:50482970 4.16E-23 dispersed
Bda01g00727 Bda-Chr1:34575149 Bda03g00060 Bda-Chr3:702498 3.78E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00060 K03661 - rcu:8284846 314.309