Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda03g00065 ATGCTGCAGCCAAAACCTTTGAAGCATTTGAACGGCCAAATTTGCCAGATATGTGGCGATACTGTTGGACTCACAGCCTCAGGTGATGTATTTGTTGCATGCAATGAATGTGCCTTCCCTGTTTGCCGGCCTTGTTACGAGTATGAGAGGAAAGATGGGAACCAATCTTGCCCCCAGTGCAAGACTAGATACAAAAGGCACAAAGGTAGTCCGAGAGTTGACGGAGATGACGATGAGGATGATGTTGATGATATTGAAAATGAGTTCAATTATGGGCAAGGAAATAGCAAGGCAAGACTCCAGTGGCTTGGAAAAGATGCTGATCTGTCATCATCTGCTAGACACGAGCCCCGACAACCAATACCTCTTCTAACCAACGGGCAACCTATCTCTGGTGAAATTCCTGCTACACCAGACAACCAATCTGTTCGGACAACGTCAGGGCCTTTAGGTCCTTCTGAAAAAAGTGTTCATTCACTTCATTACACTGATCCACGTCAGCCAGTTCCTGTAAGGATTGTCGATCCATCAAAAGACTTGAATGCTTATGGCCTTGGAAATGTTGACTGGAAGGAAAGAGTTGAAGGCTGGAAGCTCAAACAGGAGAAAACCATTATGCAGGTGACAAGTAGATACACTGAGGGGAAGGGCGATATGGAAGGCACAGGGTCTAATGGAGATGAACTGCAAATGGCTGACGATGGTAGACAACCTTTGAGTCGTGTGGTTCCAATTTCTTCTTCTCACTTGACTCCCTATCGGGTTGTGATCATACTTCGACTTATTATTTTGGGATTCTTCTTACAATACCGAGTAACGCACCCTGTGAAGGACGCATATCCATTGTGGCTGACTTCAGTTATTTGTGAGATTTGGTTTGCTTTATCATGGCTATTGGATCAGTTTCCTAAATGGTCTCCCATCAATCGCGAAACCTACATCGACAGGCTTGCATTGAGATATGATCGTGAAGGAGAGCCATCGCAGCTTGCTCCTGTAGATGTTTTTGTGAGTACAGTGGATCCACTTAAAGAGCCTCCTCTCATTACTGCGAATACTGTTCTTTCCATACTTGCTGTGGATTACCCTGTCGACAAAGTCTCTTGCTATGTCTCTGACGATGGTTCGGCTATGCTGACCTTTGAAGCCCTCTCTGAAACTGCAGAATTTGCAAGAAAGTGGGTTCCCTTCTGCAAAAAACATAACATTGAGCCAAGGGCACCTGAATTTTATTTTGCTCAAAAAATAGATTATTTGAAGGATAAGATTCAGCCATCATTTGTGAAAGAACGTAGAGCAATGAAGAGGGAGTATGAAGAATTCAAAGTTCGGATAAATGCACTGGTGGCCAAAGCACAGAAGATGCCTGAAGAAGGCTGGACGATGCAGGATGGTACTCCATGGCCTGGAAATAATCCAAGAGATCATCCAGGAATGATCCAGGTTTTTCTAGGACATAGTGGAGGACTTGACACTGATGGAAATGAGCTCCCTCGGCTTGTTTACGTTTCTAGAGAAAAAAGACCAGGCTTCCAGCATCATAAGAAAGCCGGAGCAATGAATGCATTGATTCGAGTTTCAGCTGTCCTTACCAATGGAGCATACCTCCTGAATGTTGATTGTGATCACTACTTTAACAACAGCAAAGCTCTCAAGGAAGCTATGTGTTTCATGATGGATCCTGCTTATGGAAAGAAGACATGCTACGTACAGTTCCCACAGCGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGAAACATTGTCTTCTTTGATATCAACTTGAAGGGGCTAGATGGCATCCAGGGCCCTGTATATGTCGGAACTGGTTGTTGCTTCAATAGGCAAGCTTTATATGGGTACGATCCCGTTTTGACTGAGAAAGATTTGGAACCTAATATTATTATTAAGAGTTGCTGCGGCCAAAGAAAGAAGGGTAAGATCGGCAATAAGAAGTACATCGACAACAAGAGGGCCTTGAAAAGAACTGAATCTACTGTCCCTATCTTCAATATGGAAGACATTGAGGAGGGTGTTGAAGCATATGACGATGAGAGATCTCTACTTATGTCTCAGAAGAGCTTAGAGAAGCGTTTCGGTCAATCTCCAGTTTTTATTGCAGCAACTTTCATGGAACAGGGAGGTATTCCACCTTCAACTAATCCTACAACTCTTCTAAAGGAAGCCATTCATGTTATTAGCTGTGGATATGAAGACAAGACAGATTGGGGCAAAGAGATCGGATGGATCTATGGCTCTGTTACAGAAGATATCTTAACTGGGTTCAAGATGCATGCCCGTGGTTGGATTTCGATCTATTGTATGCCTCTTCGGCCAGCATTCAAGGGGTCTGCTCCCATCAATCTTTCCGATCGGTTGAATCAGGTGCTTCGATGGGCTCTGGGTTCGATTGAGATTTTACTAAGCAGGCATTGTCCCATCTGGTATGGCTACAATGGGAGACTAAAGCTTTTGGAAAGAATAGCATACATCAATACTATTGTCTACCCACTTACTTCCATCCCTCTGTTAGCTTACTGTATTCTTCCTGCATTCTGTCTTCTGACCGGAAAATTCATCATTCCAGAGATAAGCAACTTTGCTAGCATGTGGTTCATCCTCCTTTTCGTGTCCATTTTTGCCACTGGAATCCTCGAACTTAGATGGAGTGGAGTCAGCATCGAAGACTGGTGGAGGAATGAACAATTCTGGGTCATTGGGGGCACTTCAGCTCATTTATTTGCTGTCTTCCAAGGGCTCTTGAAAGTGCTCGCCGGAATTGACACCAACTTCACTGTCACTTCCAAGGCATCCGATGAAGATGGCGAATTCTCTGAGCTTTACGAGTTCAAGTGGACATCTCTTCTCATCCCTCCCACCACCGTAATTATCGTGAATATGGTGGGTATTGTGGCTGGAGTTTCCTATGCCATTAACAGCGGGTACCAGTCATGGGGTCCTCTCTTTGGCAAGCTCTTCTTTGCATTATGGGTCATTGTCCATTTGTATCCGTTCCTCAAAGGTTTGCTTGGTCGGCAAAATCGCACCCCTACGATTGTCATCGTGTGGTCCATTCTCCTTGCTTCTATATTCTCGTTGCTCTGGGTGCGGATTGACCCGTTCACATCTGATGCGGCCAAAGCTGCAGCGAGAGGTCAATGTGGCATCAATTGCTAG 3183 44.64 MLQPKPLKHLNGQICQICGDTVGLTASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYGQGNSKARLQWLGKDADLSSSARHEPRQPIPLLTNGQPISGEIPATPDNQSVRTTSGPLGPSEKSVHSLHYTDPRQPVPVRIVDPSKDLNAYGLGNVDWKERVEGWKLKQEKTIMQVTSRYTEGKGDMEGTGSNGDELQMADDGRQPLSRVVPISSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWSPINRETYIDRLALRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEKDLEPNIIIKSCCGQRKKGKIGNKKYIDNKRALKRTESTVPIFNMEDIEEGVEAYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPTTLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPLRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPLTSIPLLAYCILPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGEFSELYEFKWTSLLIPPTTVIIVNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSDAAKAAARGQCGINC 1060
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 718275 722966 + Bda016001.1 Bda03g00065 3324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda03g00065 1060 Coils Coil 431 451 - -
Bda03g00065 1060 CDD mRING-HC-C4C4_CesA_plant 13 63 - -
Bda03g00065 1060 SUPERFAMILY RING/U-box 4 87 - -
Bda03g00065 1060 SUPERFAMILY Nucleotide-diphospho-sugar transferases 347 876 IPR029044 -
Bda03g00065 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Bda03g00065 1060 MobiDBLite consensus disorder prediction 124 153 - -
Bda03g00065 1060 Pfam Cellulose synthase 333 1050 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bda03g00065 1060 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 491 628 IPR029044 -
Bda03g00065 1060 ProSiteProfiles Zinc finger RING-type profile. 15 61 IPR001841 -
Bda03g00065 1060 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 4 1060 - -
Bda03g00065 1060 PANTHER CELLULOSE SYNTHASE 4 1060 - -
Bda03g00065 1060 MobiDBLite consensus disorder prediction 109 172 - -
Bda03g00065 1060 Pfam Zinc-binding RING-finger 5 82 IPR027934 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00065 Bda-Chr3:718275 Bda11g00870 Bda-Chr11:8572037 0 dispersed
Bda07g00415 Bda-Chr7:5315017 Bda03g00065 Bda-Chr3:718275 1.23E-126 dispersed
Bda13g00577 Bda-Chr13:6753160 Bda03g00065 Bda-Chr3:718275 4.34E-130 dispersed
Bda03g00590 Bda-Chr3:4901375 Bda03g00065 Bda-Chr3:718275 0 transposed
Bda07g00967 Bda-Chr7:11564351 Bda03g00065 Bda-Chr3:718275 3.57E-09 transposed
Bda10g00721 Bda-Chr10:41633154 Bda03g00065 Bda-Chr3:718275 0 transposed
Bda01g00738 Bda-Chr1:34669730 Bda03g00065 Bda-Chr3:718275 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda03g00065 K10999 - vvi:100254408 2059.65